Glyma07g13880 - SoyBase

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Report for Sequence Feature Glyma07g13880

Feature Type:	gene_model
Chromosome:	Gm07
Start:	13072144
stop:	13075690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g13880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07320	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein L4 \| chr1:2249190-2250173 FORWARD LENGTH=278	SoyBase	E_val: 3.00E-109	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0000311	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid large ribosomal subunit	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009547	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid ribosome	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
GO:0008266	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding	SoyBase	N/A	ISS
KOG1624	KOG	Mitochondrial/chloroplast ribosomal protein L4	JGI		ISS
PTHR10746	Panther	50S RIBOSOMAL PROTEIN L4	JGI		ISS
PF00573	PFAM	Ribosomal protein L4/L1 family	JGI		ISS
UniRef100_B9SHY1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L4, putative n=1 Tax=Ricinus communis RepID=B9SHY1_RICCO	SoyBase	E_val: 5.00E-116	ISS
UniRef100_I1KJJ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJJ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g13880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g13880 not represented in the dataset	Glyma07g13880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g13880

Paralog	Evidence	Comments
Glyma03g26080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g13880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g114900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g13880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g13880

Limit To All Plant Sequences

>Glyma07g13880.2   sequence type=transcript   gene model=Glyma07g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATCCAATCATTGTAACAGATAGGAATGAGATAGAATAGAGCATAACTTTCACTCCCTACACTCTCAGTCTGAGAAGCAGTAAAAGAAAATGGCTTCACTTTCCCTCTCCACACCAACCTCTCTTTCCTTCGCATCATCCTCCATCTTCTTCTCTTCACGCCAATTCCACACTTTCTCTTCTTCCAAATCCAACAACAAGTTTCCCATTTTACCCTCCAAAAAACCCCTATCCATTTCCTGCAAGGCCTCCCCTCCTCTTCCCGTCCTCAACTTCTCCGGCGAGAGGGTCGGCGAGTCCTTTCTCGACCTCCGCTCCGCCCCTCCCGACACCGCCCGCGCCGTCGTCCACCGCGCCGTCGTCACCGACTTGCAGAACAAGCGCCGCGGCACCGCCTCCACCCTCACCCGCGGCGAGGTCCGCGGCGGCGGCCGCAAGCCCTTCCCACAGAAGAAGACCGGCCGCGCCCGCCGCGGCTCCAACCGCACGCCCCTCCGCCCCGGCGGAGGCGTCGTCTTCGGCCCGAAGCCCCGCGACTGGTCTATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCCGTCGCAAGCGCCGCCGCCAGCGCCGTCGTGGTGGAGGACTTCGCGACGGAGTTCGCGGAGAAGCCGAAGACGAAGGAGTTCATCGCGGCAATGAAGCGGTGGGGGCTTGATCCGAAGGAGAAGGCGATGTTCTTGATGACGGAGGTGCCGGAGAACGTGAGGCTTTCCAGCAGGAACATTGGGACCTTGAAGATGCACACGCCGAGGACGCTGAATTTGTATGATATTCTTGACGCGGATAAGCTCGTGCTCACGCAGGGTGCTGTGGATTACTTGAATCAGAGGTATGGGGGTGATTATGAAGGGAGTGATGATGAAGATGAAGAAGAAGAAGAATATGAAGAGGGTGAGGAGGAAGGTGCAGTGAATGGTGAAGAAGGACCTGACGAAGAGGATGGTAATGTGGTAAATTGAGGGTTTAAAGTCTTCTTTGTGCCATTTTACAGAGGAAATTGCTGATACAGGGGATGGAAGGTACAATCTCTATCATGAATGAGCTTCATGTGTGGAGTATGTACTCCATTTTATCATGAATGAGCTTCATGTGTGGAGTATGTACTCCATTATGGTGCAGTAGGAGGTAGGGAACAATTATCCTTCAAATACATCTATATTATCACAAAAAACAAATATAGTTGAGTTAGTGAATAAATCAGTTAATGGTTACAATACTAAAAAGTTTCTTAAGAAGATATTGTATGTTAGCACAAAGTGATTTTTGTTAACAAGTCCAATTGCAATAAGACATTGATGTGTCACAGATGATGTCAAACTCTTGAGTAGAAAGAAAGTCCAACTTTGGAGCATAGATAAGGAAACTAAGACAATATTGTATTGACTAGCAATGACATAACTCATGTCAGGAATGATCATTCACTTGTCAACGAATGTTATTCGGGGACATACAAAGAATTTAATAATTTAACCAATCTGTTGATAAGTGTTATGTTGTTAATTCCTTGCCAAGTGTATCAATTTGTTCAAATAGTAAATTAAAC

Coding sequences of Glyma07g13880

Limit To All Plant Sequences

>Glyma07g13880.1   sequence type=CDS   gene model=Glyma07g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTTTCCCTCTCCACACCAACCTCTCTTTCCTTCGCATCATCCTCCATCTTCTTCTCTTCACGCCAATTCCACACTTTCTCTTCTTCCAAATCCAACAACAAGTTTCCCATTTTACCCTCCAAAAAACCCCTATCCATTTCCTGCAAGGCCTCCCCTCCTCTTCCCGTCCTCAACTTCTCCGGCGAGAGGGTCGGCGAGTCCTTTCTCGACCTCCGCTCCGCCCCTCCCGACACCGCCCGCGCCGTCGTCCACCGCGCCGTCGTCACCGACTTGCAGAACAAGCGCCGCGGCACCGCCTCCACCCTCACCCGCGGCGAGGTCCGCGGCGGCGGCCGCAAGCCCTTCCCACAGAAGAAGACCGGCCGCGCCCGCCGCGGCTCCAACCGCACGCCCCTCCGCCCCGGCGGAGGCGTCGTCTTCGGCCCGAAGCCCCGCGACTGGTCTATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCCGTCGCAAGCGCCGCCGCCAGCGCCGTCGTGGTGGAGGACTTCGCGACGGAGTTCGCGGAGAAGCCGAAGACGAAGGAGTTCATCGCGGCAATGAAGCGGTGGGGGCTTGATCCGAAGGAGAAGGCGATGTTCTTGATGACGGAGGTGCCGGAGAACGTGAGGCTTTCCAGCAGGAACATTGGGACCTTGAAGATGCACACGCCGAGGACGCTGAATTTGTATGATATTCTTGACGCGGATAAGCTCGTGCTCACGCAGGGTGCTGTGGATTACTTGAATCAGAGGTATGGGGGTGATTATGAAGGGAGTGATGATGAAGATGAAGAAGAAGAAGAATATGAAGAGGGTGAGGAGGAAGGTGCAGTGAATGGTGAAGAAGGACCTGACGAAGAGGATGGTAATGTGGTAAATTGA

>Glyma07g13880.2   sequence type=CDS   gene model=Glyma07g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCACTTTCCCTCTCCACACCAACCTCTCTTTCCTTCGCATCATCCTCCATCTTCTTCTCTTCACGCCAATTCCACACTTTCTCTTCTTCCAAATCCAACAACAAGTTTCCCATTTTACCCTCCAAAAAACCCCTATCCATTTCCTGCAAGGCCTCCCCTCCTCTTCCCGTCCTCAACTTCTCCGGCGAGAGGGTCGGCGAGTCCTTTCTCGACCTCCGCTCCGCCCCTCCCGACACCGCCCGCGCCGTCGTCCACCGCGCCGTCGTCACCGACTTGCAGAACAAGCGCCGCGGCACCGCCTCCACCCTCACCCGCGGCGAGGTCCGCGGCGGCGGCCGCAAGCCCTTCCCACAGAAGAAGACCGGCCGCGCCCGCCGCGGCTCCAACCGCACGCCCCTCCGCCCCGGCGGAGGCGTCGTCTTCGGCCCGAAGCCCCGCGACTGGTCTATCAAGATCAACCGCAAGGAGAAGCGCCTCGCCATCTCCACCGCCGTCGCAAGCGCCGCCGCCAGCGCCGTCGTGGTGGAGGACTTCGCGACGGAGTTCGCGGAGAAGCCGAAGACGAAGGAGTTCATCGCGGCAATGAAGCGGTGGGGGCTTGATCCGAAGGAGAAGGCGATGTTCTTGATGACGGAGGTGCCGGAGAACGTGAGGCTTTCCAGCAGGAACATTGGGACCTTGAAGATGCACACGCCGAGGACGCTGAATTTGTATGATATTCTTGACGCGGATAAGCTCGTGCTCACGCAGGGTGCTGTGGATTACTTGAATCAGAGGTATGGGGGTGATTATGAAGGGAGTGATGATGAAGATGAAGAAGAAGAAGAATATGAAGAGGGTGAGGAGGAAGGTGCAGTGAATGGTGAAGAAGGACCTGACGAAGAGGATGGTAATGTGGTAAATTGA

Predicted protein sequences of Glyma07g13880

Limit To All Plant Sequences

>Glyma07g13880.1   sequence type=predicted peptide   gene model=Glyma07g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSLSTPTSLSFASSSIFFSSRQFHTFSSSKSNNKFPILPSKKPLSISCKASPPLPVLNFSGERVGESFLDLRSAPPDTARAVVHRAVVTDLQNKRRGTASTLTRGEVRGGGRKPFPQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAASAVVVEDFATEFAEKPKTKEFIAAMKRWGLDPKEKAMFLMTEVPENVRLSSRNIGTLKMHTPRTLNLYDILDADKLVLTQGAVDYLNQRYGGDYEGSDDEDEEEEEYEEGEEEGAVNGEEGPDEEDGNVVN*

>Glyma07g13880.2   sequence type=predicted peptide   gene model=Glyma07g13880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSLSTPTSLSFASSSIFFSSRQFHTFSSSKSNNKFPILPSKKPLSISCKASPPLPVLNFSGERVGESFLDLRSAPPDTARAVVHRAVVTDLQNKRRGTASTLTRGEVRGGGRKPFPQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAASAVVVEDFATEFAEKPKTKEFIAAMKRWGLDPKEKAMFLMTEVPENVRLSSRNIGTLKMHTPRTLNLYDILDADKLVLTQGAVDYLNQRYGGDYEGSDDEDEEEEEYEEGEEEGAVNGEEGPDEEDGNVVN*

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