SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02140 | AT | Annotation by Michelle Graham. TAIR10: mago nashi family protein | chr1:403467-404401 REVERSE LENGTH=150 | SoyBase | E_val: 2.00E-97 | ISS |
| GO:0007530 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sex determination | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube guidance | SoyBase | N/A | ISS |
| GO:0010628 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of gene expression | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005654 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016607 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck | SoyBase | N/A | ISS |
| GO:0035145 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: exon-exon junction complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3392 | KOG | Exon-exon junction complex, Magoh component | JGI | ISS | |
| PTHR12638 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF02792 | PFAM | Mago nashi protein | JGI | ISS | |
| UniRef100_G7J8K6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mago nashi-like protein n=2 Tax=Medicago truncatula RepID=G7J8K6_MEDTR | SoyBase | E_val: 5.00E-105 | ISS |
| UniRef100_I1KJI9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJI9_SOYBN | SoyBase | E_val: 4.00E-107 | ISS |
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Glyma07g13730 not represented in the dataset |
Glyma07g13730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g115700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g13730.2 sequence type=transcript gene model=Glyma07g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CATTTGAACTTACACCGCGTGACCTAGCCAAGCCAACACAAAGGGCACAGAAGAGGGTTTCTTTTCGTTTCGTTTCAATGGGGAGCGAAGAGGAGAACGGCGAATTCTACCTGCGATACTACGTCGGGCACAAGGGCAAGTTCGGTCACGAGTTCTTGGAGTTCGAGTTCCGCCCCGACGGGAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTCACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCTCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCGGAACCTGATCGGGTGGGGCGGCAGGAGCTGGAGATTGTTATGGGGAACGAGCACATTTCGTTTACGACTTCAAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCAGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTTTGATTTCCCTTCACTTCAAGATCAAGCCTATCTAGGGTGTTTGCAATATTATGCATTCATCCTCTGGGAAATATGTACTTGTTTAGCAACTCTCACTTTTTGCTAATGGAGTTCAGCTTCTGATAGATTGACTTTGTAATCGTGAAATGATTTAGTTCTGTATTGGTGGTTACATGAATTGGAATTTTAGATTTGAGGGTATAGCCCTTGAACTATAAGTGTTGATTGGATTGGTTTTTATGCATGGCTTACTTATTCTTTCTTTCCTTTGCTTTCACCGTTGGATCATCCTAAATGTTGCATCTTGGAATTACTTATTGTCCGTGTGAGATATGTACATGCTAGCTTTTATCAGGATTTCTTTGAGATGGAAAAATATTTTATTTACACAATTTATACAATTCTATTTGAATAAGATTTTAACATTGCACTGGTGGGGAG
>Glyma07g13730.1 sequence type=CDS gene model=Glyma07g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGCGAAGAGGAGAACGGCGAATTCTACCTGCGATACTACGTCGGGCACAAGGGCAAGTTCGGTCACGAGTTCTTGGAGTTCGAGTTCCGCCCCGACGGGAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTCACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCTCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCGGAACCTGATCGGGTGGGGCGGCAGGAGCTGGAGATTGTTATGGGGAACGAGCACATTTCGTTTACGACTTCAAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCAGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTTTGATTTCCCTTCACTTCAAGATCAAGCCTATCTAG >Glyma07g13730.2 sequence type=CDS gene model=Glyma07g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAGCGAAGAGGAGAACGGCGAATTCTACCTGCGATACTACGTCGGGCACAAGGGCAAGTTCGGTCACGAGTTCTTGGAGTTCGAGTTCCGCCCCGACGGGAAGCTCCGCTACGCCAACAACTCCAACTACAAAAACGACACCATCATCCGCAAGGAGGTTTACCTCACCCCCGCCGTTCTCCGCGAGTGCCGTCGCATCATCTCCGAGAGCGAGATTATGAAGGAAGATGATAACAACTGGCCGGAACCTGATCGGGTGGGGCGGCAGGAGCTGGAGATTGTTATGGGGAACGAGCACATTTCGTTTACGACTTCAAAGATTGGGTCTCTTGTTGATGTTCAGAGCAGTGCTGACCCAGAGGGTCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTTTGATTTCCCTTCACTTCAAGATCAAGCCTATCTAG
>Glyma07g13730.1 sequence type=predicted peptide gene model=Glyma07g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEEENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI* >Glyma07g13730.2 sequence type=predicted peptide gene model=Glyma07g13730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEEENGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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