SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G44770 | AT | Annotation by Michelle Graham. TAIR10: ELMO/CED-12 family protein | chr2:18457817-18459886 FORWARD LENGTH=266 | SoyBase | E_val: 5.00E-155 | ISS |
| GO:0006909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phagocytosis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005856 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2998 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12771 | Panther | ENGULFMENT AND CELL MOTILITY | JGI | ISS | |
| PTHR12771:SF3 | Panther | ELMO1 | JGI | ISS | |
| PF04727 | PFAM | ELMO/CED-12 family | JGI | ISS | |
| UniRef100_B9SKK4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ELMO domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKK4_RICCO | SoyBase | E_val: 4.00E-165 | ISS |
| UniRef100_I1KJI5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJI5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g13700 not represented in the dataset |
Glyma07g13700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g116000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g13700.1 sequence type=CDS gene model=Glyma07g13700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGATAGAGGTAGCTCATTCATCACTGTTAGGAGAATTCCCCACGGAGAAACCTGCCATTCAAATTCTGCTGAGGTTGTGGTAGGGTCAGCCGCATGGCTTGGGCGAGGTCTGTCTTGTGTCTGTGTACAAAGAAGAGATAGTGATGCTTCTAACACTTTCGATTTAACCCTAGCCCAGGAGGAATGCTTGCAGAGGATACAGAGACGTATAGATGTTCCATATGATAGTTCTATAATTGAGCACCAGGATGCCCTTAGGGCTTTGTGGAATGCTGCATTTCCTGAAGAAGAACTTCATGGCTTGATATCTGAGCAGTGGAAGGAAATGGGTTGGCAAGGGAAAGATCCATCAACAGATTTTAGGGGTGGTGGTTTTATATCATTGGAGAATTTTCTCTTCTTTGCTAGGAATTTCCCGAAATCCTTCCAGGATCTTTTACGCAAGCAAGAAGGAGATCGATCAGTGTGGGAATACCCATTTGCAGTTGCTGGTGTTAACATCACATACATGCTGATACAAATGCTTGATCTTGAAGCAGTCAAGCCACGCAATCTGGTTGGAGCAACTTTTCTAAAATTTCTTGCAGAAAATGAGTCAGCTTTTGATCTTCTCTATTGCATAACTTTCAAGCTAATGGATCATCAATGGCTTTCTATGCATGCCTCATACATGGATTTTAATGCAGTGATGAAAGAAACACGACGCCAGCTAGAGAAAGAACTTCTCGTTGAAGACATAGCCCAGCTTGAAGATTTACCCTCATACAAATTACTTTCCCGATAG
>Glyma07g13700.1 sequence type=predicted peptide gene model=Glyma07g13700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDRGSSFITVRRIPHGETCHSNSAEVVVGSAAWLGRGLSCVCVQRRDSDASNTFDLTLAQEECLQRIQRRIDVPYDSSIIEHQDALRALWNAAFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENFLFFARNFPKSFQDLLRKQEGDRSVWEYPFAVAGVNITYMLIQMLDLEAVKPRNLVGATFLKFLAENESAFDLLYCITFKLMDHQWLSMHASYMDFNAVMKETRRQLEKELLVEDIAQLEDLPSYKLLSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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