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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80600 | AT | Annotation by Michelle Graham. TAIR10: HOPW1-1-interacting 1 | chr1:30298675-30300513 REVERSE LENGTH=457 | SoyBase | E_val: 0 | ISS |
| GO:0006526 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0044419 | GO-bp | Annotation by Michelle Graham. GO Biological Process: interspecies interaction between organisms | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0080022 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary root development | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003992 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| KOG1401 | KOG | Acetylornithine aminotransferase | JGI | ISS | |
| PTHR11986 | Panther | AMINOTRANSFERASE CLASS III | JGI | ISS | |
| PTHR11986:SF19 | Panther | AMINOTRANSFERASE YODT-RELATED | JGI | ISS | |
| PF00202 | PFAM | Aminotransferase class-III | JGI | ISS | |
| UniRef100_B9RI18 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acetylornithine aminotransferase, putative n=1 Tax=Ricinus communis RepID=B9RI18_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KJG6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJG6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g13320 not represented in the dataset |
Glyma07g13320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g118300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g13320.3 sequence type=transcript gene model=Glyma07g13320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAAACGTGAGCCGCCAAGCATAAATATCACCTAACAACAGTATCAGAATTTTCTATTTTTCTTGCTTTATTTTATTCCACACGCATGCAAAAGCAACTTTTTAAAATTATTTACTACTATATTTTATTACTAACTCTCTCTCTCTCACTAAGCTACACCTTTTGTCTCTCTGATTTTTCTCAGCACACACTTGAAAGCGAGAACACCCTTGTTTGTTTTAGCTCCTAAGTTGGAAGCTTGTAGATTGATTTTCACTGCCAAGCAAAAGAAAGTGAGGGAATCTAACCCTTAATTGAACACAATGAGTTCATTTTACATGTCTCTGAACCCTTCAATTTCTCAATCGTGTTACAAACCCAAGCAATTTTTCAATTTGGAGAGAGAGAGTACTTTGGTGGGAAGAAGTCCTGTTATTCAGATTAGATGCCGGAGGGTTGTGAGTGCGTGTCTTAACGTGGATGTTGATGCACCTGATAGTGGGAAGACAGCATTGGAGAAAACCAAGGATGTGATCGAGATGGAAGGGAAGTTCTTGGTGGGGACATATGCAAGAACACCGGTGGTGCTTGAGAGGGGGGAAGGTTGCAAATTGTATGATGTTGAAGGGAGAGAATATTTAGATTTGAGTGCTGGGATTGCTGTCAATGCACTAGGGCACGGGGATGCAGATTGGTTGAAAGCTGTTGTTGAGCAAGCCGGTACTCTTACTCATACCAGCAACATATTCCACACAATACCTCAGGTAGAACTTGCGAAGCGTCTTGTGGCTTCTTCTTTTGCTGATCGTGTGTTCTTTGCAAATTCTGGAACCGAAGCGAATGAAGCAGCTATTAAATTTGCAAGAAAATATCAGAGAGACACAACTACTGACGGCAAAGAGCCGGCAACAGAGTTCATAGCTTTTAGTAACTGCTTCCATGGGAGAACCCTGGGTGCACTTGCTTTGACAAGTAAAGTGCAATACAGGACACCTTTTGAACCTGTTATGCCTGGAGTGACCTTTCTAGAATATGGAAATGCTCAGGCCGCAGTAGAATTAATTAAGCAGGGCAAGATAGCTGCAGTTTTTGTAGAACCCATTCAAGGAGAAGGTGGAATTTACAGTGCCACAAAAGAATTTCTACAGTCTCTGCATAGTGCTTGTGATGAAGCTGGGGCACTTCTCGTTTTTGATGAGGTTCAATGTGGTTTAGGTAGATCAGGGTTTCTTTGGGCCCATGAGGCATTTGGTGTCTTCCCGGATATGATGACCCTTGCAAAGCCTCTTGCTGGAGGCCTACCTATTGGAGCAGTCCTAGTGACTGAGAGAGTTGCTTCTTCTATAAATTATGGTGACCATGGAAGCACTTTTGCTGGAAACCCTCTTGTTTGTAGTGCTGCCCTTGCTGTTTTTGATAAAATATCAAAACCTGATTTCCTGTCGTCTGTATCTAAGAAAGGCCTCTACTTCAAAGAATTACTCAAGCAGAAGTTAGGAGGAAACCAACATGTGAAAGAAATTCGTGGTGTTGGGCTAATCATAGGAATAGATTTAGATGTACCTGCCTCACCCTTTGTCGATGCATGCCGAAATTCTGGCCTTTTAGTATTAACTGCTGGAAAAGGAAATGTTGTCAGGCTTGTCCCACCATTGATCATAACAGAGAAAGAGCTCGAGCTAGCGGCCGACATTTTGTGCAAAACTTTACCAGTTCTTGATAACTAGGAGTGTAAGAGAAAGAGGTTTGGCTTTACAAGCAAAATAGAAAACTTAATTGGTTGTGTATTGTTGAGTAGCTTTTAGATGCCAAAACTTCATGGTTTCCCTTTCATTTAAGATGTCTCGATGGTAAGAATATTTCAGAAATATTGTAGCATTTCTTTGATTATGCGTCCCGGATCAGATGGTTTACATGGTCTATTCTCTTTCTGCAAGAGATTTATTTGGGTATTTTTTGTCATATAAAGTGTAATAATAACTACAAGGTCTTCTGAGTTCCCCTCATAACCGTAGATAAACTATCTTCTTTTGGTAGATGGCTGTTGTTCAGATTCTTCTTTCTCCGTTGGAAAAACTTCTAAAAAAGTCTACCTAGTTTTGTGGTACATTGACTTGTTTTGAATTTTCTTATTTGAAATGAACTTGTGTTGTGTTGCTAACTTTTGGTCTCTTCTTTATCTATATTTTTTC
>Glyma07g13320.2 sequence type=CDS gene model=Glyma07g13320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCATTTTACATGTCTCTGAACCCTTCAATTTCTCAATCGTGTTACAAACCCAAGCAATTTTTCAATTTGGAGAGAGAGAGTACTTTGGTGGGAAGAAGTCCTGTTATTCAGATTAGATGCCGGAGGGTTGTGAGTGCGTGTCTTAACGTGGATGTTGATGCACCTGATAGTGGGAAGACAGCATTGGAGAAAACCAAGGATGTGATCGAGATGGAAGGGAAGTTCTTGGTGGGGACATATGCAAGAACACCGGTGGTGCTTGAGAGGGGGGAAGGTTGCAAATTGTATGATGTTGAAGGGAGAGAATATTTAGATTTGAGTGCTGGGATTGCTGTCAATGCACTAGGGCACGGGGATGCAGATTGGTTGAAAGCTGTTGTTGAGCAAGCCGGTACTCTTACTCATACCAGCAACATATTCCACACAATACCTCAGGTAGAACTTGCGAAGCGTCTTGTGGCTTCTTCTTTTGCTGATCGTGTGTTCTTTGCAAATTCTGGAACCGAAGCGAATGAAGCAGCTATTAAATTTGCAAGAAAATATCAGAGAGACACAACTACTGACGGCAAAGAGCCGGCAACAGAGTTCATAGCTTTTAGTAACTGCTTCCATGGGAGAACCCTGGGTGCACTTGCTTTGACAAGTAAAGTGCAATACAGGACACCTTTTGAACCTGTTATGCCTGGAGTGACCTTTCTAGAATATGGAAATGCTCAGGCCGCAGTAGAATTAATTAAGCAGGGCAAGATAGCTGCAGTTTTTGTAGAACCCATTCAAGGAGAAGGTGGAATTTACAGTGCCACAAAAGAATTTCTACAGTCTCTGCATAGTGCTTGTGATGAAGCTGGGGCACTTCTCGTTTTTGATGAGGTTCAATGTGGTTTAGGTAGATCAGGGTTTCTTTGGGCCCATGAGGCATTTGGTGTCTTCCCGGATATGATGACCCTTGCAAAGCCTCTTGCTGGAGGCCTACCTATTGGAGCAGTCCTAGTGACTGAGAGAGTTGCTTCTTCTATAAATTATGGTGACCATGGAAGCACTTTTGCTGGAAACCCTCTTGTTTGTAGTGCTGCCCTTGCTGTTTTTGATAAAATATCAAAACCTGATTTCCTGTCGTCTGTATCTAAGAAAGGCCTCTACTTCAAAGAATTACTCAAGCAGAAGTTAGGAGGAAACCAACATGTGAAAGAAATTCGTGGTGTTGGGCTAATCATAGGAATAGATTTAGATGTACCTGCCTCACCCTTTGTCGATGCATGCCGAAATTCTGGCCTTTTAGTATTAACTGCTGGAAAAGGAAATGTTGTCAGGCTTGTCCCACCATTGATCATAACAGAGAAAGAGCTCGAGCTAGCGGCCGACATTTTGTGCAAAACTTTACCAGTTCTTGATAACTAG >Glyma07g13320.3 sequence type=CDS gene model=Glyma07g13320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCATTTTACATGTCTCTGAACCCTTCAATTTCTCAATCGTGTTACAAACCCAAGCAATTTTTCAATTTGGAGAGAGAGAGTACTTTGGTGGGAAGAAGTCCTGTTATTCAGATTAGATGCCGGAGGGTTGTGAGTGCGTGTCTTAACGTGGATGTTGATGCACCTGATAGTGGGAAGACAGCATTGGAGAAAACCAAGGATGTGATCGAGATGGAAGGGAAGTTCTTGGTGGGGACATATGCAAGAACACCGGTGGTGCTTGAGAGGGGGGAAGGTTGCAAATTGTATGATGTTGAAGGGAGAGAATATTTAGATTTGAGTGCTGGGATTGCTGTCAATGCACTAGGGCACGGGGATGCAGATTGGTTGAAAGCTGTTGTTGAGCAAGCCGGTACTCTTACTCATACCAGCAACATATTCCACACAATACCTCAGGTAGAACTTGCGAAGCGTCTTGTGGCTTCTTCTTTTGCTGATCGTGTGTTCTTTGCAAATTCTGGAACCGAAGCGAATGAAGCAGCTATTAAATTTGCAAGAAAATATCAGAGAGACACAACTACTGACGGCAAAGAGCCGGCAACAGAGTTCATAGCTTTTAGTAACTGCTTCCATGGGAGAACCCTGGGTGCACTTGCTTTGACAAGTAAAGTGCAATACAGGACACCTTTTGAACCTGTTATGCCTGGAGTGACCTTTCTAGAATATGGAAATGCTCAGGCCGCAGTAGAATTAATTAAGCAGGGCAAGATAGCTGCAGTTTTTGTAGAACCCATTCAAGGAGAAGGTGGAATTTACAGTGCCACAAAAGAATTTCTACAGTCTCTGCATAGTGCTTGTGATGAAGCTGGGGCACTTCTCGTTTTTGATGAGGTTCAATGTGGTTTAGGTAGATCAGGGTTTCTTTGGGCCCATGAGGCATTTGGTGTCTTCCCGGATATGATGACCCTTGCAAAGCCTCTTGCTGGAGGCCTACCTATTGGAGCAGTCCTAGTGACTGAGAGAGTTGCTTCTTCTATAAATTATGGTGACCATGGAAGCACTTTTGCTGGAAACCCTCTTGTTTGTAGTGCTGCCCTTGCTGTTTTTGATAAAATATCAAAACCTGATTTCCTGTCGTCTGTATCTAAGAAAGGCCTCTACTTCAAAGAATTACTCAAGCAGAAGTTAGGAGGAAACCAACATGTGAAAGAAATTCGTGGTGTTGGGCTAATCATAGGAATAGATTTAGATGTACCTGCCTCACCCTTTGTCGATGCATGCCGAAATTCTGGCCTTTTAGTATTAACTGCTGGAAAAGGAAATGTTGTCAGGCTTGTCCCACCATTGATCATAACAGAGAAAGAGCTCGAGCTAGCGGCCGACATTTTGTGCAAAACTTTACCAGTTCTTGATAACTAG
>Glyma07g13320.2 sequence type=predicted peptide gene model=Glyma07g13320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFYMSLNPSISQSCYKPKQFFNLERESTLVGRSPVIQIRCRRVVSACLNVDVDAPDSGKTALEKTKDVIEMEGKFLVGTYARTPVVLERGEGCKLYDVEGREYLDLSAGIAVNALGHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADRVFFANSGTEANEAAIKFARKYQRDTTTDGKEPATEFIAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFLEYGNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLHSACDEAGALLVFDEVQCGLGRSGFLWAHEAFGVFPDMMTLAKPLAGGLPIGAVLVTERVASSINYGDHGSTFAGNPLVCSAALAVFDKISKPDFLSSVSKKGLYFKELLKQKLGGNQHVKEIRGVGLIIGIDLDVPASPFVDACRNSGLLVLTAGKGNVVRLVPPLIITEKELELAADILCKTLPVLDN* >Glyma07g13320.3 sequence type=predicted peptide gene model=Glyma07g13320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFYMSLNPSISQSCYKPKQFFNLERESTLVGRSPVIQIRCRRVVSACLNVDVDAPDSGKTALEKTKDVIEMEGKFLVGTYARTPVVLERGEGCKLYDVEGREYLDLSAGIAVNALGHGDADWLKAVVEQAGTLTHTSNIFHTIPQVELAKRLVASSFADRVFFANSGTEANEAAIKFARKYQRDTTTDGKEPATEFIAFSNCFHGRTLGALALTSKVQYRTPFEPVMPGVTFLEYGNAQAAVELIKQGKIAAVFVEPIQGEGGIYSATKEFLQSLHSACDEAGALLVFDEVQCGLGRSGFLWAHEAFGVFPDMMTLAKPLAGGLPIGAVLVTERVASSINYGDHGSTFAGNPLVCSAALAVFDKISKPDFLSSVSKKGLYFKELLKQKLGGNQHVKEIRGVGLIIGIDLDVPASPFVDACRNSGLLVLTAGKGNVVRLVPPLIITEKELELAADILCKTLPVLDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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