Glyma07g13297 - SoyBase

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Report for Sequence Feature Glyma07g13297

Feature Type:	gene_model
Chromosome:	Gm07
Start:	11873817
stop:	11875929
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g13297

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17080	AT	Annotation by Michelle Graham. TAIR10: Histone H3 K4-specific methyltransferase SET7/9 family protein \| chr4:9601570-9603815 FORWARD LENGTH=513	SoyBase	E_val: 2.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR23084	Panther	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED	JGI		ISS
PTHR23084:SF27	Panther	PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE-RELATED	JGI		ISS
PF02493	PFAM	MORN repeat	JGI		ISS
UniRef100_B9SKF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9SKF6_RICCO	SoyBase	E_val: 4.00E-62	ISS
UniRef100_I1JMM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMM4_SOYBN	SoyBase	E_val: 5.00E-75	ISS

Expression Patterns of Glyma07g13297

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g13297 not represented in the dataset	Glyma07g13297 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g13297

Paralog	Evidence	Comments
Glyma03g25510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g13297 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g118500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g13297

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g13297

Limit To All Plant Sequences

>Glyma07g13297.1   sequence type=CDS   gene model=Glyma07g13297   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCAGAAATGGTGATGCATATGCTGGTGAATACTTTGCGGATAAGATGCATGGGTTTGGGGTATATAGTTTTGCAAATGGGCATTGTTATGAAGGATCCTGGCATGAAGGAAAAAGGCAAGGTGTTGGAATGTATACATTTAGAAATGGAGAAACCCAGTCTGGTCACTGGCAAAATGGAGTCCTTGACATTCCAAGCACACAGAGTGCCACCTATCCTGTTTCTCCTGTTGGTGTCAATCATTCCAGAGTACTTAATGCAGTTCAGGAAGCAAGAAGAGCAACTGAGAAAGCCTATGATGTGGCCAAGGTAGATGAGAGGGTTAATAGAGCAGTAGCAGCTGCTAACAGAGCAGCCAATGCAGCTAGAGTAGCTGCTGTCAAGGCCGTGCAAAACCAAATGCATCATAACGTTAACAGCATGAGCATCCCAATTCCCATTGTGTGA

Predicted protein sequences of Glyma07g13297

Limit To All Plant Sequences

>Glyma07g13297.1   sequence type=predicted peptide   gene model=Glyma07g13297   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IRNGDAYAGEYFADKMHGFGVYSFANGHCYEGSWHEGKRQGVGMYTFRNGETQSGHWQNGVLDIPSTQSATYPVSPVGVNHSRVLNAVQEARRATEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQNQMHHNVNSMSIPIPIV*

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