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Report for Sequence Feature Glyma07g13230

Feature Type:gene_model
Chromosome:Gm07
Start:11764552
stop:11784123
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g13230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18450AT Annotation by Michelle Graham. TAIR10: actin-related protein 4 | chr1:6348199-6351766 FORWARD LENGTH=441 SoyBaseE_val: 0ISS
GO:0000003GO-bp Annotation by Michelle Graham. GO Biological Process: reproduction SoyBaseN/AISS
GO:0000398GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006312GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic recombination SoyBaseN/AISS
GO:0006325GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin organization SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009560GO-bp Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0009933GO-bp Annotation by Michelle Graham. GO Biological Process: meristem structural organization SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0048235GO-bp Annotation by Michelle Graham. GO Biological Process: pollen sperm cell differentiation SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0048574GO-bp Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005200GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton SoyBaseN/AISS
KOG0679 KOG Actin-related protein - Arp4p/Act3p JGI ISS
PTHR11937Panther ACTIN JGI ISS
PTHR11937:SF32Panther ACTIN-RELATED M1 JGI ISS
PF00022PFAM Actin JGI ISS
UniRef100_B9RE21UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RE21_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KJG0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJG0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g13230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g13230 not represented in the dataset
Glyma07g13230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g13230
ParalogEvidenceComments
Glyma03g25550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g13230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g118800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g13230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g13230
>Glyma07g13230.1   sequence type=CDS   gene model=Glyma07g13230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGGCGGTGATGAAGTATCAGCTATAGTAATTGACTTGGGTTCACACACTTGTAAAGCTGGTTATGCCGGTGAAGATGCTCCCAAGGCTGTGTTTCCCTCTGTTGTTGGAGCAATTGATCAAATGGATGTTGATGAAGCAGATAATGGTGAAAAGAACCCTGGCTCTGCTCCGGAATCAAATAATAATAATGTTAGAAATGCTGATTCTGACAAGGCCAAGGGAAAGAGGAAATTGTATGTAGGATCCCAGTCCTTGGGGTACCGCAGAGACCATATGGAGGTGCTGTCTCCATTTAAGGATGGAGTTGTTGCTGACTGGGATATTGTTGACAGCATATGGGATCATGCCTTCAGGGAGTGCCTATTGATTGATCCTAAAGAGCATCCTATGCTCCTTGCAGAGCCCTCTTCTAACTCTCAACAACAGAGAGAAAGGACAGTGGAGCATATGTTTGAGAAGTACAAAGCACCTGCATTATTTTTGGCAAAAAATGCTGTTCTGACTTCTTTTGCATCAGGGCGTGCTACGTCTGTAGTTGTTGATGGTGGTGGAGGCTCAACTACAGTTGCACCGGTACATGATGGTTATGTTCTTCAAAAGGCTGTGGCAACCTCTCCAATTGGAGGAGAATTTCTTACAGACTGCTTGATGAAAAGTTTGGAAAGCAAGGGTATTATGATAAAACCTCGGTATTCCTTCAGGAGAAAGGAAATACGCCCTGGAGAGTTTCAGACAGTTGATCTTGAATTTCCCAATACTACTGAAAGCTACAAACTCTTTTCCCAGAGGGTGATTGCTAGTGATATCAAGGAATGTGTGTGCCGTGCTCCAGATACTCCATATGATGAGAGTGCGTATTCAAACATTCCAATGACCTCATATGAGCTTCCTGATGGCCAGACAGTTGAAATTGGAGCTGACAGATTTAAGATACCAGATGTTCTTTTCAATCCATCCCTGGTTCAGTCAATTCCTGGCATGGAGAGCTTTGCAGAAATTGCTCCTTCAGTTCGTGGCCTGCCCCAAATGGTGATTGAAAGCATTAATAAGTGTGATGTAGACATTCGAAGAGAGTTGTTTAATAGTATACTGCTTGCTGGTGGTACAGCTTCAATGCAACAACTAAAGGAACGCCTTGAGAAAGACTTGTTAGAGGAATCCCCTCAAGCTGCCAGAGTAAAAGTATTGGCCAGTGGGAATGCTACTGAAAGAAGGTTTAGTGTTTGGATCGGGGGTAGTATATTGGCATCTCTTGGCTCCTTCCAGCAAATGTGGTTCTCCAAATCCGAGTATGAAGAGCATGGAGCTTCATATATCCAAAGGAAGTGTCCATGA
Predicted protein sequences of Glyma07g13230
>Glyma07g13230.1   sequence type=predicted peptide   gene model=Glyma07g13230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDVDEADNGEKNPGSAPESNNNNVRNADSDKAKGKRKLYVGSQSLGYRRDHMEVLSPFKDGVVADWDIVDSIWDHAFRECLLIDPKEHPMLLAEPSSNSQQQRERTVEHMFEKYKAPALFLAKNAVLTSFASGRATSVVVDGGGGSTTVAPVHDGYVLQKAVATSPIGGEFLTDCLMKSLESKGIMIKPRYSFRRKEIRPGEFQTVDLEFPNTTESYKLFSQRVIASDIKECVCRAPDTPYDESAYSNIPMTSYELPDGQTVEIGADRFKIPDVLFNPSLVQSIPGMESFAEIAPSVRGLPQMVIESINKCDVDIRRELFNSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP*






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