SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02150 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:408779-410433 FORWARD LENGTH=524 | SoyBase | E_val: 0 | ISS |
| GO:0006364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: rRNA processing | SoyBase | N/A | ISS |
| GO:0006399 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA metabolic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24015:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_B9SKK8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKK8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JMN3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JMN3_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma07g13170 not represented in the dataset |
Glyma07g13170 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g25670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g119200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g13170.2 sequence type=CDS gene model=Glyma07g13170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTCTCCTTCGAATTCAACCCTCTTTGTCTTTGCACAACCAAACCCTCTCTCTCTCTTTCTCATCTTCCCTTTCCTATTCCTCTTCAGTCCTCTTCAAGCACTCTACTATCACCCACGGTCACACGCAGAGCCTGTGCTTCTACCACCCTCGCCTCTCGGTGGTCACGACGTGTTCCATCTCCAAGATACACAGCTACGGCACCGTCGACTACGAGCGCCGCCCCATCGTGGGCTGGAACGACGTCTACCGCAGGATATCGCTCAATCCAAACCCCCAAGTGGGGTCCGCAGAGGTGCTCAACCAGTGGGAGAACGAAGGGAGACACCTCACCAAATGGGAGCTTTCAAGAGTCGTTAAGGAGTTGAGGAAGTACAAGAGATTTCGAAGAGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCTGAGAGTGATGCAGCAATTCAGTTAGATTTAATAGCAAAAGTTCGTGGACTTTCTAGTGCAGAAGCATTCTTTCTGAGTCTGGAAGATAAGTTAAAAGATAAGAAGACTTATGGTGCCCTGTTGAATGTATATGTGCATTCTAGATCGAAGGAAAAGGCAGAATCTTTATTTGATACAATGAGGAGTAAAGGGTATGTAATACATGCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTTAATGAATATGCTAAAGTTGATATCTTGGCTTCTGAAATGATGGAAAAAAACATACAGCTAGATATCTATACATATAATATCTGGTTATCTTCGTGTGGATCTCAAGGATCAGTAGAAAAGATGGAACAAGTGTTTGAACAAATGGAAAAGGATCCTTCCATTATCCCTAACTGGTCTACATTCAGCACAATGGCTTCAATGTACATTAGGATGGATCAGAATGAAAAAGCAGAAGAGTGCTTAAGAAAGGTTGAGGGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTTCTGAGTTTATATGGAAGTGTTGGAAAGAAAGACGAAGTGTGTCGTGTGTGGAATACATACAAATCAATTTTTCCAAGTATACCAAACTTGGGATACCATGCTATTATTTCTTCTCTGGTTAAATTGGATGATATTGAGGTTGCAGAAAAACTCTATGAGGAATGGATTTCAGTAAAGTCAAGTTATGATCCTAGAATTGGAAACCTTCTCATAGGCTGGTATGTTAAGAAAGGCGACACAGATAAAGCTTTGAGTTTCTTTGAGCAGATGTTGAATGATGGTTGCATTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGCCACATTGCAGATAAGAGGATTTCTGAAGCCATGTCCTGCTTGAAAGAAGCTTTTATGGCTGCTGGTGGTTCAAAGAGTTGGAGACCAAAGCCCTCATACTTGTCTGCATTCCTTGAGCTTTGTCAAGAGCAAGATGACATGGAAAGTGCTGAGGTTTTAATTGGACTTCTGAGGCAGTCAAAATTTAATAAAAGTAAAGTTTATGCATCTCTCATTGGCTCATCTGATGAATTGCCAAAGATTGATACAGCTGATAGAACTGATGATGCTGTTGACAGTGAAAACATGGATAATGACTTGTTGAACCAACTCGGTAGTAGCTCTTGA
>Glyma07g13170.2 sequence type=predicted peptide gene model=Glyma07g13170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLLRIQPSLSLHNQTLSLSFSSSLSYSSSVLFKHSTITHGHTQSLCFYHPRLSVVTTCSISKIHSYGTVDYERRPIVGWNDVYRRISLNPNPQVGSAEVLNQWENEGRHLTKWELSRVVKELRKYKRFRRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGLSSAEAFFLSLEDKLKDKKTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIHALPFNVMMTLYMNLNEYAKVDILASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMEKDPSIIPNWSTFSTMASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVCRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEVAEKLYEEWISVKSSYDPRIGNLLIGWYVKKGDTDKALSFFEQMLNDGCIPNSNTWEILSEGHIADKRISEAMSCLKEAFMAAGGSKSWRPKPSYLSAFLELCQEQDDMESAEVLIGLLRQSKFNKSKVYASLIGSSDELPKIDTADRTDDAVDSENMDNDLLNQLGSSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
