SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G05170 | AT | Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 11 | chr2:1870020-1873278 FORWARD LENGTH=932 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2114 | KOG | Vacuolar assembly/sorting protein PEP5/VPS11 | JGI | ISS | |
| PTHR23323 | Panther | VACUOLAR MEMBRANE PROTEIN RELATED | JGI | ISS | |
| PTHR23323:SF24 | Panther | VACUOLAR MEMBRANE PROTEIN PEP5, 11 | JGI | ISS | |
| PF00637 | PFAM | Region in Clathrin and VPS | JGI | ISS | |
| PF12451 | PFAM | Vacuolar protein sorting protein 11 C terminal | JGI | ISS | |
| UniRef100_G7I3K9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein-like protein n=1 Tax=Medicago truncatula RepID=G7I3K9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KJF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJF2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g13120 not represented in the dataset |
Glyma07g13120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g24990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g119500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g13120.1 sequence type=CDS gene model=Glyma07g13120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGGCGCGAAGTGCGCGGTTCCTGAGGCCGACGAAGACGACAGCGGCGTCATCGCAGCGGAGAGGAAGATCGAGTGCTGTTCGAGCGGTAGGGGCAAAGTCGTCACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGAGGCCTCAAGTTTAACTACGCTTTCCAGCCTCACTCCTCTTCCGTTCTCTTTCTTCAGCAACTCAAGCAACGCAACTTTCTGGTAACAATTGGGGAGGATGAACAGCTTACTCCCCAGCAAACAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAATCGGAGAGTTCGAGCACGACAAGTCCTGATTGCGTTGGGATATTGCGAATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCATTTTTGGTTTTAGAAGAAGTGCCACCTATACTACTCATAGCTATTGGCTTGGACAGTGGTTCTATTTACTGCATCAAAGGAGACATTGCACGGGAGCGTATCACTCGTTTCAAGCTTCAGGTGGAAAACAACCATTCGGACAAAACTCTTTCTGCTGTAACTGGACTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGTTGTGACTCCAAGTTCAGTGAGCTTGTTTTCGTTGCATGATCAACCGCCAAGAAGGCAGACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTGCAATGAGTGATCGATCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCTCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGCTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTACAGACTCAGCAAGCAGATGCAGCAGCTACTGCTGAAGTGTTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGGATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACTAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAAGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATAGAGCACAAGCCAGTGGAGACAATTCAGATTCTCATAAGGCTTTGCACAGAAGATGGTGACAAAAGAGGACGCTCAAATGGAGTGTACATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATCTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCACAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCACAAGTTAATGATGGTGGAAATTACCTTAATGGAGCATCAGCAAAAACCATGATTTTAAGTGCTCAATCTAATGGAAACATTGGTGATCACAAAAGTTCAGAGCAGGAAAAGAACCATCTCGAAAGACTTGAAAAGGGTTTACGCTTGCTTAAGACTGCATGGCCTCCAGAGACAGAACATCCACAATATGATGTTGATTTAGCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAGAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAGGCACACGATCATGAGGGGCTAATTGCATGCTGCAAGAGGCTGGGGGATTCTGTTAAAGGAGGGGACTCATCTCTTTGGGCAGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATGATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACGCTTTCTGTGCTCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGGCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTCGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATTTGCCTGCCGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGTGATAATGAAAAAGAATGCCCTCAGTGTGCACCTGAATATAGGTCTGTCTTAGAAATGAAAAAAAATTTAGAGCAAAATTCTAAGGATCAGGACAGATTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGTCCCGTATCCGGAACTGCATCATCCAGTAGTGGTTTCTAA
>Glyma07g13120.1 sequence type=predicted peptide gene model=Glyma07g13120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYQWRKFEFFEEKYGAKCAVPEADEDDSGVIAAERKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQQTALCLKVFDLDKMQSESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDSGSIYCIKGDIARERITRFKLQVENNHSDKTLSAVTGLGFRVDGQSLQLFVVTPSSVSLFSLHDQPPRRQTLDQIGSGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGDKRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGASAKTMILSAQSNGNIGDHKSSEQEKNHLERLEKGLRLLKTAWPPETEHPQYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDSSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPMIVLQTLSRNPCLTLSVLKDYIARKLERESKMIEEDRQAIEKYQEDTLAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPQCAPEYRSVLEMKKNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPVSGTASSSSGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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