SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22860 | AT | Annotation by Michelle Graham. TAIR10: Vacuolar sorting protein 39 | chr1:8083400-8088867 FORWARD LENGTH=961 | SoyBase | E_val: 0 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| KOG2063 | KOG | Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 | JGI | ISS | |
| PTHR12894 | Panther | CNH DOMAIN CONTAINING | JGI | ISS | |
| PTHR12894:SF4 | Panther | TGF BETA RECEPTOR ASSOCIATED PROTEIN -1 | JGI | ISS | |
| PF00637 | PFAM | Region in Clathrin and VPS | JGI | ISS | |
| PF00780 | PFAM | CNH domain | JGI | ISS | |
| PF10366 | PFAM | Vacuolar sorting protein 39 domain 1 | JGI | ISS | |
| PF10367 | PFAM | Vacuolar sorting protein 39 domain 2 | JGI | ISS | |
| UniRef100_F4I312 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar sorting protein 39 n=2 Tax=Arabidopsis thaliana RepID=F4I312_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337DA8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337DA8 related cluster n=1 Tax=unknown RepID=UPI0002337DA8 | SoyBase | E_val: 0 | ISS |
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Glyma07g13040 not represented in the dataset |
Glyma07g13040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g24940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g119900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g13040.2 sequence type=CDS gene model=Glyma07g13040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGGTTGAAAGCAGCAGCAGCATTAGCATGAGCATGAGCCGCGTGGTGCTGGAGCCCCACGCGCAGTTCGACCTCACGGCCCACTCACGCGCCAGCTCCATTCGATCCCTCGCAATCGCCCACTCGAAACGACACCATACGACTCTTTTCTACGTTGGAACTCACTCCGGAACTCTCTTTTCCCTCTCCGCCGAAGATTCCAACTACACCGACGACGACGCCGTTTTGCGCAAGCTCTCCTTCCTAAGAAGCGTTTCGGTCAGCGACACCGCCGTCGAGTCCATTTCGGTCATCGAAGAGTTCGGGAAGCTTCTGCTGCTCTCCGATGGGGCTCTGTTCTTGGTCGATTCCGAGCTCTCAAATGGCGCCACGAAATTGAGTTTCCCCAAGGGGGTTTCGTTGGTCACGAGGAGAAGGTTCAGGAACAACGGCGGTGGAGAATCTGAGGGTTTCGGTTCAGGTTTAGGTTCAGGTTCGGGTTTAGGGTTGTTTCAGAAATTGAGAATGAACTCAATGAAGGAGGTTGATGTGCAGAGTGAGACAGGTGGTGGATTTGTTTTTGCAGTTGTTGTTGGTAAGAGGCTGATTCTAGCGGAGCTTGTTTTGGGGAATAGGAATGGGAAAACTGAGAGGGATGATGGTGGTGGTGGTACTCTTGTGATTTTGAAGGAGATTCAGTGTGTTGATGGGGTTGTTAGTGCCATGGTGTGGCTCAATGATTCTATAGTTGTTGGTACTGTGAATGGGTACAGCTTGATTTCCTGTGTGACTGGGCAGAATAGCGTGATCTTCTCGTTGCCAGACGTGTCACGGCCGCCCAGGTTGAAGCTCTTGCACAAGGAGTGGAGGGTGCTGTTGTTGGTGGACAATGTGGGGGTTATTGTTGACCCCCACGGGCAGCCCGTGGGGGGGAGTCTGGTGTTCCGGCACGGCTTGGACTTGGTGGGGGAGATTGATTCCTATGTGGTGGTTGTGAGTGATGGGAAGATTGAGTTATATCATAAGAGGCATTGTGGTTGTGTTCAGGTGTTGCCCTTTGGCGGGGAAGGGGTTGGGCGATGTGTTGTTGCCAGCGAGGAAGATAGGGGTGGGAGGCTTGTTGCTGTTGCAACTGCTACCAAGGTAGTGTGCTATCAGAAATTACCTTCAGTGGAACAAATAAAAGACCTTCTGAGGAAGAAGAACTATAAGGGAGCCATATCCTTGGTGGAGGAGCTTGAGTCAGAAGGTGAAATGTCAAAAGATTTGCTCTCGTTTGTTCATGCTCAAGTGGGATTTCTCTTGCTTTTTGACTTACATTTTAAAGAAGCAGTGGACCACTTCTTGCTTTCTGAGACGATGCAACCTTCTGAAGTATTCCCATTTATAATGCGAGATCCAAATCGCTGGTCCTTACTGGTTCCTAGGAATAGGTATTGGGGTTTGCATCCTCCACCAGCCCCTCTTGAAGATGTAATAGATGATGGCTTGATGACAATCCAAAGAGCTTCTTTCCTGAGGAAAGCAGGCGTAGAAACAATAGTAGATAGTGACCTTTTTCTCAATCCAGCGAATAGAGCTGATTTGTTGGAGTCAGCAATCAAGAATATTAGCAGGTATTTGGAGGCCTGTCGAGAAAAAGACCTAACGGAATCAGTCAGGGAGGGAGTTGATACTCTACTAATGTATCTGTATAGAGCTTTAAATTCTGTCGAGGACATGGAGAGGCTGGCTTCTTCTATAAACTGGTGTGTTGTGGAGGAATTGGAACAAATGCTAGAAGAGTCTGGGCACCTACGGACACTTGCCTTCCTATGTGCAAGTAAAGGAATGAGCTCAAAAGCTGTGCATATTTGGCGCATCCTGGCACGAAATTATTCATCCGGCCTCTGGAAAGACCCTTCTTTGGAGAATATTACACAGAATAGTGGGGAAAACCTTATTTCTGGCAGGGCAATTGCTGCAGCTGAAGCTTCAAAGATTCTTGAGGAATCATCTGACCAAGAATTGATTCTACAACATCTAGGATGGATTGCAGATATCAGCCAGGTTCTTGCAGTCAATGTTTTGACTTCAGACAAACGAGAGATCCAGCTTTCTCCTGATGAAGTTGTTACAACTATTGATCCGCAGAAGGTTGAAATTTTACAGAGGTATCTTCAGTGGTTGATTGAAGACCAGGACTGTAATGATACACAGCTGCATACATTGTATGCCCTCTCACTTGCCAAATCAGCAATCAAAGCCTTTGAATCCGAAAATATTTCTGAGAATCTTGATAGTGGAAATATAGGGACAAGAAGTTTGGCCATGTTGAAGAACTCAATCTTTAAGATTCCTGTCAGGGAAAGATTACAGATATTTTTGCAGTCCTCAGACTTGTATGATCCAGAAGAAGTTCATGACTTGATTGAAGGATCAGAATTGTGGTTAGAAAAGGCTATTCTGTATAGAAGACTGGGGCAGGAGACTTTGGTCCTCCAAATTTTGGCTTTGAAACTGGAAGACAGTGAAGCTGCTGAGCAATATTGTGCTGAGATAGGAAGAGCTGATGCATATATGCAGTTGCTTGAAATGTATTTGGATCCACAAGATGATAAGGATCCTATGTTTACTGCTGCTGTTCGCCTTCTCCATAAACATGGAGAATCACTAGATCCATTGCAAGTTTTAGAGAAACTGTCTCCAGATATGCCGCTTCAACTTGCTTCTGATACTTTACTAAGAATGTTCAGGGCCAGAGTTCATCATCATCGTCAAGGACAGATTGTGCATAATTTATCTCGTGCCGTAGACATTGATGCAAGATTGTCAAGATTGGAGGAGAGGTCAAGGCATGTACAGATTAATGATGAGAGTCTCTGTGACTCCTGTGATGCACGCCTTGGTACGAAGCTATTTGCAATGTATCCTGATGACTCCGTTGTATGTTACAAGTGTTACCGCCGTCAAGGTGAGTCAGTGTCTGTCTCAGGTCGCAATTTTAAGGAAGACATCCTAATTAAACCGGGTTGGCTCGTGAGTCGTTGA
>Glyma07g13040.2 sequence type=predicted peptide gene model=Glyma07g13040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKVESSSSISMSMSRVVLEPHAQFDLTAHSRASSIRSLAIAHSKRHHTTLFYVGTHSGTLFSLSAEDSNYTDDDAVLRKLSFLRSVSVSDTAVESISVIEEFGKLLLLSDGALFLVDSELSNGATKLSFPKGVSLVTRRRFRNNGGGESEGFGSGLGSGSGLGLFQKLRMNSMKEVDVQSETGGGFVFAVVVGKRLILAELVLGNRNGKTERDDGGGGTLVILKEIQCVDGVVSAMVWLNDSIVVGTVNGYSLISCVTGQNSVIFSLPDVSRPPRLKLLHKEWRVLLLVDNVGVIVDPHGQPVGGSLVFRHGLDLVGEIDSYVVVVSDGKIELYHKRHCGCVQVLPFGGEGVGRCVVASEEDRGGRLVAVATATKVVCYQKLPSVEQIKDLLRKKNYKGAISLVEELESEGEMSKDLLSFVHAQVGFLLLFDLHFKEAVDHFLLSETMQPSEVFPFIMRDPNRWSLLVPRNRYWGLHPPPAPLEDVIDDGLMTIQRASFLRKAGVETIVDSDLFLNPANRADLLESAIKNISRYLEACREKDLTESVREGVDTLLMYLYRALNSVEDMERLASSINWCVVEELEQMLEESGHLRTLAFLCASKGMSSKAVHIWRILARNYSSGLWKDPSLENITQNSGENLISGRAIAAAEASKILEESSDQELILQHLGWIADISQVLAVNVLTSDKREIQLSPDEVVTTIDPQKVEILQRYLQWLIEDQDCNDTQLHTLYALSLAKSAIKAFESENISENLDSGNIGTRSLAMLKNSIFKIPVRERLQIFLQSSDLYDPEEVHDLIEGSELWLEKAILYRRLGQETLVLQILALKLEDSEAAEQYCAEIGRADAYMQLLEMYLDPQDDKDPMFTAAVRLLHKHGESLDPLQVLEKLSPDMPLQLASDTLLRMFRARVHHHRQGQIVHNLSRAVDIDARLSRLEERSRHVQINDESLCDSCDARLGTKLFAMYPDDSVVCYKCYRRQGESVSVSGRNFKEDILIKPGWLVSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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