SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g12980): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g12980): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g12980

Feature Type:gene_model
Chromosome:Gm07
Start:11430877
stop:11435295
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g12980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G60210AT Annotation by Michelle Graham. TAIR10: GroES-like family protein | chr3:22251443-22252709 REVERSE LENGTH=138 SoyBaseE_val: 4.00E-60ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG1641 KOG Mitochondrial chaperonin JGI ISS
PTHR10772Panther GROES CHAPERONIN JGI ISS
PTHR10772:SF0Panther 10 KDA HEAT SHOCK PROTEIN JGI ISS
PF00166PFAM Chaperonin 10 Kd subunit JGI ISS
UniRef100_C6T249UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T249_SOYBN SoyBaseE_val: 2.00E-92ISS
UniRef100_G7LDE7UniRef Annotation by Michelle Graham. Most informative UniRef hit: 10 kDa chaperonin n=1 Tax=Medicago truncatula RepID=G7LDE7_MEDTR SoyBaseE_val: 4.00E-71ISS

Expression Patterns of Glyma07g12980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g12980 not represented in the dataset
Glyma07g12980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g12980
ParalogEvidenceComments
Glyma03g24900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g12980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g120400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g12980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g12980
>Glyma07g12980.1   sequence type=CDS   gene model=Glyma07g12980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCAACGTTTCTCACCCTACCAACTCCCTTCCTACACAAAACTAATGCCATCACTTTCTCTGACAAGAGACCCTCATTTTTGCAGAGGAGCTCTCTGAAGATCAATGCAATTACCAAAAAATGGGAACCCACTAAGGTTGTACCTCAGGCTGATAGAGTTCTTGTTCGTTTGGAGGAGCTATCAGATAAAACAGTTGGTGGAGTTTTGCTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTTGTGGGAGAAATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAGGTACTATTCACTGACATGAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTATTGGCCGTGGTTGAGTAG
Predicted protein sequences of Glyma07g12980
>Glyma07g12980.1   sequence type=predicted peptide   gene model=Glyma07g12980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTFLTLPTPFLHKTNAITFSDKRPSFLQRSSLKINAITKKWEPTKVVPQADRVLVRLEELSDKTVGGVLLPKSAVKFERYLVGEILTVGAEAGELKAGTKVLFTDMNAYEVDLGTDAKHCFCKASDLLAVVE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo