SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60190 | AT | Annotation by Michelle Graham. TAIR10: DYNAMIN-like 1E | chr3:22244367-22247651 REVERSE LENGTH=624 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0446 | KOG | Vacuolar sorting protein VPS1, dynamin, and related proteins | JGI | ISS | |
| PTHR11566 | Panther | DYNAMIN | JGI | ISS | |
| PTHR11566:SF12 | Panther | DYNAMIN | JGI | ISS | |
| PF00350 | PFAM | Dynamin family | JGI | ISS | |
| PF01031 | PFAM | Dynamin central region | JGI | ISS | |
| PF02212 | PFAM | Dynamin GTPase effector domain | JGI | ISS | |
| UniRef100_B9SKH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dynamin, putative n=1 Tax=Ricinus communis RepID=B9SKH8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KJE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJE0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g12850 not represented in the dataset |
Glyma07g12850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g24610 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g120900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g12850.1 sequence type=CDS gene model=Glyma07g12850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACGAGCATGGAGAGCTTGATCGGCTTGGTGAACAGAATCCAGCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCGCCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGAGTTCGGGGAAGTCTTCGGTTTTGGAAAGCATCGTTGGACGTGACTTTCTTCCTAGAGGATCAGGAATTGTGACGAGGCGTCCATTGGTGTTGCAGCTTCATAAGGTTGACGGTAGAGCGAAGGAGTATGCAGAGTTTCTTCACATGCCAGGGCAAAAGATAACCGATTATGCATTTGTCCGTCAGGAAATTCAGAATGAAACTGATAGAGTAACGGGGAGGACAAAACAAATATCTCCTGTTCCAATTCATCTTAGCATTTATTCTCCACATGTTGTCAACCTAACTTTGATTGATTTACCTGGATTAACTAAAGTTGCTGTAGAGGGACAGCCCGAGACTATTGCTCAAGACATTGAAAATATGGTTCGATCTTTTGTTGAGAAGCCTAATTGTATTATACTGGCAATATCTCCAGCCAACCAAGACATAGCAACTTCTGATGCTATTAAACTTTCGAGGGAGGTGGATCCCTCAGGTGAGAGGACATTTGGAGTGTTGACAAAGCTGGATTTGATGGACAAAGGAACTAATGCATTGGATGTCCTTGAAGGAAGATCTTACCGTCTGCAACATCCCTGGGTTGGTGTAGTTAATCGATCCCAAGCAGATATCAATAAAAACGTTGATATGATTGTTGCTAGACGTAAGGAGAGTGAGTATTTTGAAACTAGTCCTGACTATGGGCACTTAGCCAATAAAATGGGTTCCGTATACCTTGCAAAACTTCTCTCACAGCATTTGGAGTCAGTAATTAGGGCACGGATACCTAATATAACATCTTTGATAAACAAAACAATTGAAGAGCTTGAATCAGAGATGAACCAAATTGGGAGACCAATTGCTGCTGATGCTGGGGCTCAACTATACACCATCCTAGAACTATGCCGCGCATTTGATCGGATATTCAAGGAGCATCTAGATGGAGGGCGACCAGGAGGAGATAGGATCTATAATGTCTTTGACAATCAGCTTCCTGCAGCGTTACGGAAGCTTCCATTTGACCGACATCTTTCTCTTCAAAATGTAAGGAAAGTGGTATCAGAGGCAGATGGCTACCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGACGCCTCATTGAGGGAGCTCTCGGCTACTTTAGAGGTCCAGCTGAAGCTTCAGTCGATGCAGTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAGGAACTGAGACGTTTCCCAACTCTCCAAGCCGAAATAGCTGCAGGTACAAATGAGGCTTTAGAGAGGTTCCGTGAAGAGAGTAAGAAGACAGTTATCCGGCTTGTGGACATGGAAGCTTCATATCTCACTGTGGAGTTCTTCCGGAAACTTCCTCAAGAAATGGAGAAAGCTGGAAATCCAGCTAATCAGCCTACCCCAAATGTGGATCGATATGGAGAAGGGCATTACAGGAGGATTGGATCAAACGTATCTTCCTATATCGGTATGGTATCAGACACTCTTAGGAACACTATTCCAAAGGCTGTGGTTTATTGTCAGGTCAGAGAAGCAAAACTGTCATTGCTAAACCATTTCTACACACAAATAGGGAAGAAAGAGGCTAAACAGCTATCACAGTTGTTAGATGAAAACCCTGCCTTGATGGAGCGGAGGCAACAATGTGCTAAAAGGCTTGAACTATATAAAGCGGCAAGGGATGAAATTGATTCTGTTTCTTGGGCACGATGA
>Glyma07g12850.1 sequence type=predicted peptide gene model=Glyma07g12850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSMESLIGLVNRIQQACTVLGDYGAADNSAFSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKVDGRAKEYAEFLHMPGQKITDYAFVRQEIQNETDRVTGRTKQISPVPIHLSIYSPHVVNLTLIDLPGLTKVAVEGQPETIAQDIENMVRSFVEKPNCIILAISPANQDIATSDAIKLSREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGVVNRSQADINKNVDMIVARRKESEYFETSPDYGHLANKMGSVYLAKLLSQHLESVIRARIPNITSLINKTIEELESEMNQIGRPIAADAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYNVFDNQLPAALRKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHFVLKELVRKSIAETQELRRFPTLQAEIAAGTNEALERFREESKKTVIRLVDMEASYLTVEFFRKLPQEMEKAGNPANQPTPNVDRYGEGHYRRIGSNVSSYIGMVSDTLRNTIPKAVVYCQVREAKLSLLNHFYTQIGKKEAKQLSQLLDENPALMERRQQCAKRLELYKAARDEIDSVSWAR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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