Glyma07g12840 - SoyBase

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Report for Sequence Feature Glyma07g12840

Feature Type:	gene_model
Chromosome:	Gm07
Start:	11281769
stop:	11288338
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g12840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G26667	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr5:9276659-9278091 FORWARD LENGTH=202	SoyBase	E_val: 6.00E-122	ISS
GO:0006139	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process	SoyBase	N/A	ISS
GO:0009173	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleoside monophosphate metabolic process	SoyBase	N/A	ISS
GO:0046939	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide phosphorylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004127	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytidylate kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009041	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uridylate kinase activity	SoyBase	N/A	ISS
GO:0016776	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, phosphate group as acceptor	SoyBase	N/A	ISS
GO:0019205	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleobase-containing compound kinase activity	SoyBase	N/A	ISS
KOG3079	KOG	Uridylate kinase/adenylate kinase	JGI		ISS
PTHR23359	Panther	ADENYLATE KINASE	JGI		ISS
PF00406	PFAM	Adenylate kinase	JGI		ISS
UniRef100_I1KJD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Adenylate kinase 8 n=1 Tax=Glycine max RepID=I1KJD9_SOYBN	SoyBase	E_val: 4.00E-173	ISS
UniRef100_I1KJD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylate kinase 8 n=1 Tax=Glycine max RepID=I1KJD9_SOYBN	SoyBase	E_val: 4.00E-173	ISS

Expression Patterns of Glyma07g12840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g12840 not represented in the dataset	Glyma07g12840 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g12840

Paralog	Evidence	Comments
Glyma03g24600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g12840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g121000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g12840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g12840

Limit To All Plant Sequences

>Glyma07g12840.2   sequence type=transcript   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTATTTTTCCTTTCCCCCAAAAAATAAAAAGCACACCTTCATTCGTTCCTCTTTCTTTCTTCCAACTCTATAAATATCAATCAAAATTCCCCTCCACACTCATTCTCCCATCGTTTTCCCTTTCTCTCTCTCATTCTCTTCTCCATCGCGCGTAAGAAACACATTTTAGTTGCTACTAATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGGTAATTGATAGTTGTGTTTCTACCATATTTTTTACAAATATAAAAGTTCCTTTGGTACTGAGGACATCACAAATATTTCTTTTAGATTGATGCTGCAAGACCTATCGAAGAGGTATTTGAGACAGTCAAAGCAATTTTTGGTCCAAAGAATGACAAGGCTGATTGAGCATGTTCATCTTGACTCCATGGTGGAAATTTAGAGGTAAAAGTTGCAACGTATGGTAGAAGGTGCCATATATTTATATTTGCATATGATGCATTTTACTGTACTATCTGGTCTTGAAACCTGTTGTGGATTTCTGACTAGTGGAAGCAATAAAGTTTACTGAGTAGGGCAATCTAACATTAGAAGTTTTCTTAGAGTACGGGACAAATATCTTATTTCAATTCTTCTATAGGTTTATCATTTTAAAATTTTAAAGTTAGATATCCTTCCAAGTGGTAAGGCATCTATTCTTTTTGGATTTGCTTTTCGGATCTATGTCTAGGCACTCTATCTGGACAAGATAACACGATCAACCACCTTTTGTATAATACTTTTCTACATGTATGGTTAGTGCTGAAAATTAAAGAATATTCTTTCTTGAATCGTCCAAGTTGTAGACTGTAATTTTGGCTATATCATTGGATGAATCAGGTTTGTTTTATAAGCTACTTGGCATCTTTTCTTTTAAAAATCTAAATTCGTACT

>Glyma07g12840.3   sequence type=transcript   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTAGCCGTTACAATCACGCAAACACCACCCAACTTTCCCATTTTGGCCCTACCGACTATTAAAAACGACCTTCGTGTCATTCTCCTTCATCAACTTCACTTCTCTATTTTTCCTTTCCCCCAAAAAATAAAAAGCACACCTTCATTCGTTCCTCTTTCTTTCTTCCAACTCTATAAATATCAATCAAAATTCCCCTCCACACTCATTCTCCCATCGTTTTCCCTTTCTCTCTCTCATTCTCTTCTCCATCGCGCGTAAGAAACACATTTTAGTTGCTACTAATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGATTGATGCTGCAAGACCTATCGAAGAGGTATTTGAGACAGTCAAAGCAATTTTTGGTCCAAAGAATGACAAGGCTGATTGAGCATGTTCATCTTGACTCCATGGTGGAAATTTAGAGGTCATATCAGTATTGGTGGCTTGTTCTATTGTGTCACATTTTGTTATTATAGTATAGAAAATCGTAGTTTATACCTGAGGGTTTTACCTCTGTATTCTAATGTTATATCTTGTTGACTCATTCATTGATATTGCAATAAAGATTTTCGTGTGGGATTCTTTCTACCATTTATTTATTTAT

>Glyma07g12840.4   sequence type=transcript   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTATTTTTCCTTTCCCCCAAAAAATAAAAAGCACACCTTCATTCGTTCCTCTTTCTTTCTTCCAACTCTATAAATATCAATCAAAATTCCCCTCCACACTCATTCTCCCATCGTTTTCCCTTTCTCTCTCTCATTCTCTTCTCCATCGCGCGTAAGAAACACATTTTAGTTGCTACTAATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGATTGATGCTGCAAGACCTATCGAAGAGGTATTTGAGACAGTCAAAGCAATTTTTGGTCCAAAGAATGACAAGGCTGATTGAGCATGTTCATCTTGACTCCATGGTGGAAATTTAGAGGTAAAAGTTGCAACGTATGGTAGAAGGTGCCATATATTTATATTTGCATATGATGCATTTTACTGTACTATCTGGTCTTGAAACCTGTTGTGGATTTCTGACTAGTGGAAGCAATAAAGTTTACTGAGTAGGGCAATCTAACATTAGAAGTTTTCTTAGAGTACGGGACAAATATCTTATTTCAATTCTTCTATAGGTTTATCATTTTAAAATTTTAAAGTTAGATATCCTTCCAAGTGGTAAGGCATCTATTCTTTTTGGATTTGCTTTTCGGATCTATGTCTAGGCACTCTATCTGGACAAGATAACACGATCAACCACCTTTTGTATAATACTTTTCTACATGTATGGTTAGTGCTGAAAATTAAAGAATATTCTTTCTTGAATCGTCCAAGTTGTAGACTGTAATTTTGGCTATATCATTGGATGAATCAGGTTTGTTTTATAAGCTACTTGGCATCTTTTCTTTTAAAAATCTAAATTCGTACT

Coding sequences of Glyma07g12840

Limit To All Plant Sequences

>Glyma07g12840.1   sequence type=CDS   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGATTGATGCTGCAAGACCTATCGAAGAGGTATTTGAGACAGTCAAAGCAATTTTTGGTCCAAAGAATGACAAGGTAAATCACTATGTTCGCCTTATGTCAAAACTTTATATGTACAAGTTCCATTTTGTATCGAAGACAAAAATTGGGAATCATTGCCTTCCTTGTTAA

>Glyma07g12840.2   sequence type=CDS   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGGTAATTGATAGTTGTGTTTCTACCATATTTTTTACAAATATAAAAGTTCCTTTGGTACTGAGGACATCACAAATATTTCTTTTAGATTGA

>Glyma07g12840.3   sequence type=CDS   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGATTGATGCTGCAAGACCTATCGAAGAGGTATTTGAGACAGTCAAAGCAATTTTTGGTCCAAAGAATGACAAGGCTGATTGA

>Glyma07g12840.4   sequence type=CDS   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACTGTTGAAGCTGCAAACAAGGATGCAAATGGAAGTCTCCTAGAGAAAAATCCTTCAGTTGTTTTTGTGTTAGGTGGCCCAGGAAGTGGAAAGGGTACCCAATGTGCAAATATTGTCCAAAATTTTGGGTATACTCATCTCAGCGCTGGTGATCTTCTGCGAGCAGAAATCAAATCTGGTTCTGAAAATGGTACAATGATTCAGAATATGATTAAAGAAGGAAAAATTGTTCCCTCTGAGGTAACAATTAAGCTCTTACAAAAAGCAATGCAGGAAAGTGGCAATGACAAATTTCTTATTGATGGTTTTCCCCGCAATGAGGAAAACCGGGCAGCATTTGAGAAAGTGACAGGAATAGAGCCAGCATTTGTCTTATTTTTTGATTGCCCTGAGGAAGAGATGGAGAGGCGACTTCTTAGTAGGAACCAGGGTAGAGAAGATGACAATATTGAAACAATAAGGAAGCGGTTTAAGGTTTTCTTGGAGTCTAGTCTTCCCGTGATTAATTATTATGATGCAAAGGGAAAAGTTCGCAAGATTGATGCTGCAAGACCTATCGAAGAGGTATTTGAGACAGTCAAAGCAATTTTTGGTCCAAAGAATGACAAGGCTGATTGA

Predicted protein sequences of Glyma07g12840

Limit To All Plant Sequences

>Glyma07g12840.1   sequence type=predicted peptide   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTVEAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVTGIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKVRKIDAARPIEEVFETVKAIFGPKNDKVNHYVRLMSKLYMYKFHFVSKTKIGNHCLPC*

>Glyma07g12840.2   sequence type=predicted peptide   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTVEAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVTGIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKVRKVIDSCVSTIFFTNIKVPLVLRTSQIFLLD*

>Glyma07g12840.3   sequence type=predicted peptide   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTVEAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVTGIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKVRKIDAARPIEEVFETVKAIFGPKNDKAD*

>Glyma07g12840.4   sequence type=predicted peptide   gene model=Glyma07g12840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTVEAANKDANGSLLEKNPSVVFVLGGPGSGKGTQCANIVQNFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMQESGNDKFLIDGFPRNEENRAAFEKVTGIEPAFVLFFDCPEEEMERRLLSRNQGREDDNIETIRKRFKVFLESSLPVINYYDAKGKVRKIDAARPIEEVFETVKAIFGPKNDKAD*

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