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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50120 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:18562302-18566015 FORWARD LENG | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0044036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR12507 | Panther | REDUCED GROWTH PHENOTYPE 1 (RGP1, YEAST)-RELATED | JGI | ISS | |
| PF08737 | PFAM | Rgp1 | JGI | ISS | |
| UniRef100_G7LDH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Retrograde Golgi transport protein RGP1-like protein n=1 Tax=Medicago truncatula RepID=G7LDH4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337DA1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337DA1 related cluster n=1 Tax=unknown RepID=UPI0002337DA1 | SoyBase | E_val: 0 | ISS |
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Glyma07g12813 not represented in the dataset |
Glyma07g12813 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g24581 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g121300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g12813.2 sequence type=transcript gene model=Glyma07g12813 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTATTAAAACATTTAATATTGTATGTAGCTACTAGTCGACAGTGGATTCTCCGTGACTCAGATCAGATCCCGTCTGAGAAGAACTCTGATCATTGCTGAACCAAAAGCGCAATGCTATCTGGGAGATTCTCGTTTTTCGGAGGCGGCGGGGATTCCGGCGCGGTGGTGGATAACACCAATTCGTCACCATCAAAGTGTGGCGAAGAACAACTCGCTGTTGTTCAACCCACACTGAAGCTCGAGACCGATAGGCAGGTTTACAGGCCCGGCGATCCTGTGATTGTGACCATCCAGATCTCAAATCCCGCAAAGGGGTACTCGTTTCTGATGGAAAGACTCGGTTTTGAGATCAGGGGCATCGAGAAATTGGACACTCAGTGGTTCGCCACGCAGAAGCCGATGCCCGGCTCGAAACAAAAGAGAGGTGAGCATGCTTTTCTGGAGTGCTCAACACCGGTCCTAGTTGCAAACCAGATTGTTAATGCTGGAGCCAGCAAATCATATGTGGTGCGAACGCAGCTGCCTAGCATTATTCCACCATCTTACAAGGGTTCAAGCATTCGCTATCTGTACTATATTAAAAGTGCATTAACCGGAGAGTGGATAATATATGAAAATGGGCAATCTCGTGCGGAGATCAAAAATGATGTCACAGATTTGGAAGTTCGTATTCCATTACAATTATGGATAAACCAGAAAAGTAGTGCCTTTCCAATGGATGATGATATTGTTCCCTTAACTACTGTACAATTGGATATATTTTGGAAAGAGATGGATGGAGATGCTGATTGGATTAGAGCAAATGATATGTATGATGGAGTTGAGGATGGCTATGACAGCTCAAGAGATGACATCTCATCAGTTTCTTCTTATAACCCCATGAGAGAGAGTCTACACAGAGGCTTTGGAAGTTCACTGTCATTGCGATCTTCTTCTGCAAGATCATTGTCCAGGGATGCTTCTACTTTAGAAGGTTTCCGAACAAGTTTATCTTCAAATATGGCACTTCCTAGGCTGTCTGTTGCTGAAGTGTTGTCTGATTCTGGTGCTGATGTCTTGTCAACCCAGAAGTCATTTGCGATTGTCTCCCCAAATGAGCAACAGAAGCTGCGAAAGACATTTTCTGCAGAAGATGATGTGGGAGTATCCTCTTCACCTGAAGCTGGGGCTGTAGAATCTTTATCATCAGAAGGCTTTATTAGAGGAAGGTCTTATAATATCCGACTTGATGATCAAGTTTTGCTTAAATTTTCCCCTAGAAATTCCGACTCAACTTATTACTTCAGTGATATGATAGGTGGCACTCTCACTTTCTTTCATGAAGGAGCTAGGAGATGCCTTGAGATCTCAATAACATTGGAAACTTCGGAAACTATAAATCGGCGATTTGTCCACCCTTCTAGAAGGAATTCACCTACAATCACAAAGGTTCAGAGTGATCATCATGAGGTTGTTGCAGATTTGGTGCAGACAAGCTTTCTTTTTTCTATCCCCATGGATGGTCCAATGTCCTTCTCAACTCAACATGTATCTGTGCAGTGGGTTCTCCGCTTTGAATTTTTCACAACTCCAAAGCATGTAGATTGGAAAAAGTATGAGCATCCTCTTCTAATTGAGGGAAGGGAAAAAACGGAATGGGTTCTTCCAATTACTGTACATGCTCCACCACCAAGAGGAGCTCCTGCTTCTGGCACAAGAAGTGAGAAACTTTTCTCTTTGGATCCTATGTGGGTACACAATTGAAGTTAAATTAAACTGAAGCTGAAATGTATGGAACCGACCATTGTAGCCTTTTGAAAACCCGAAGCTTCAGTTCCTTAATGTACAAAATATTCACAAAATAGCAGCCATTGAAATGTCAGAATGATCATTTGTGGCGTATCAGAATTCGGTCAATTTGTCGTAATCGGTTAACTGAAATTTGGCAGAGGTCTTTTGAGTACACAGTATTTCTTCTCATTTCATGTTTTCTTGGTGCCGGGTGATTTATGATTCATAGTTCATCCAGTTAATTGATTTTGTTTTATTTTTTATTACTCAAAAAGGGTTTTTAGTAGATTGTATGAATCTGTTCTGTTTTGGCTACTAAATCATTAATTAGAGAGAGTTGTATAAGTTGGTATCTTAGATTTGATGATTTCAGTCTCTTGGACGTCTTGGATCAACTATGTTAACTTTGTACACTTATTAATTTCTTTTACATTTTTTTGCATTCTTTTGTGATGTTAATGTAATCAATACTACTCAATAATCCTCCTCT
>Glyma07g12813.1 sequence type=CDS gene model=Glyma07g12813 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTATCTGGGAGATTCTCGTTTTTCGGAGGCGGCGGGGATTCCGGCGCGGTGGTGGATAACACCAATTCGTCACCATCAAAGTGTGGCGAAGAACAACTCGCTGTTGTTCAACCCACACTGAAGCTCGAGACCGATAGGCAGGTTTACAGGCCCGGCGATCCTGTGATTGTGACCATCCAGATCTCAAATCCCGCAAAGGGGTACTCGTTTCTGATGGAAAGACTCGGTTTTGAGATCAGGGGCATCGAGAAATTGGACACTCAGTGGTTCGCCACGCAGAAGCCGATGCCCGGCTCGAAACAAAAGAGAGGTGAGCATGCTTTTCTGGAGTGCTCAACACCGGTCCTAGTTGCAAACCAGATTGTTAATGCTGGAGCCAGCAAATCATATGTGGTGCGAACGCAGCTGCCTAGCATTATTCCACCATCTTACAAGGGTTCAAGCATTCGCTATCTGTACTATATTAAAAGTGCATTAACCGGAGAGTGGATAATATATGAAAATGGGCAATCTCGTGCGGAGATCAAAAATGATGTCACAGATTTGGAAGTTCGTATTCCATTACAATTATGGATAAACCAGAAAAGTAGTGCCTTTCCAATGGATGATGATATTGTTCCCTTAACTACTGTACAATTGGATATATTTTGGAAAGAGATGGATGGAGATGCTGATTGGATTAGAGCAAATGATATGTATGATGGAGTTGAGGATGGCTATGACAGCTCAAGAGATGACATCTCATCAGTTTCTTCTTATAACCCCATGAGAGAGAGTCTACACAGAGGCTTTGGAAGTTCACTGTCATTGCGATCTTCTTCTGCAAGATCATTGTCCAGGGATGCTTCTACTTTAGAAGGTTTCCGAACAAGTTTATCTTCAAATATGGCACTTCCTAGGCTGTCTGTTGCTGAAGTGTTGTCTGATTCTGGTGCTGATGTCTTGTCAACCCAGAAGTCATTTGCGATTGTCTCCCCAAATGAGCAACAGAAGCTGCGAAAGACATTTTCTGCAGAAGATGATGTGGGAGTATCCTCTTCACCTGAAGCTGGGGCTGTAGAATCTTTATCATCAGAAGGCTTTATTAGAGGAAGGTCTTATAATATCCGACTTGATGATCAAGTTTTGCTTAAATTTTCCCCTAGAAATTCCGACTCAACTTATTACTTCAGTGATATGATAGGTGGCACTCTCACTTTCTTTCATGAAGGAGCTAGGAGATGCCTTGAGATCTCAATAACATTGGAAACTTCGGAAACTATAAATCGGCGATTTGTCCACCCTTCTAGAAGGAATTCACCTACAATCACAAAGGTTCAGAGTGATCATCATGAGGTTGTTGCAGATTTGGTGCAGACAAGCTTTCTTTTTTCTATCCCCATGGATGGTCCAATGTCCTTCTCAACTCAACATGTATCTGTGCAGTGGGTTCTCCGCTTTGAATTTTTCACAACTCCAAAGCATGTAGATTGGAAAAAGTATGAGCATCCTCTTCTAATTGAGGGAAGGGAAAAAACGGAATGGGTTCTTCCAATTACTGTACATGCTCCACCACCAAGAGGAGCTCCTGCTTCTGGCACAAGAAGTGAGAAACTTTTCTCTTTGGATCCTATGTGGGTACACAATTGA >Glyma07g12813.2 sequence type=CDS gene model=Glyma07g12813 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTATCTGGGAGATTCTCGTTTTTCGGAGGCGGCGGGGATTCCGGCGCGGTGGTGGATAACACCAATTCGTCACCATCAAAGTGTGGCGAAGAACAACTCGCTGTTGTTCAACCCACACTGAAGCTCGAGACCGATAGGCAGGTTTACAGGCCCGGCGATCCTGTGATTGTGACCATCCAGATCTCAAATCCCGCAAAGGGGTACTCGTTTCTGATGGAAAGACTCGGTTTTGAGATCAGGGGCATCGAGAAATTGGACACTCAGTGGTTCGCCACGCAGAAGCCGATGCCCGGCTCGAAACAAAAGAGAGGTGAGCATGCTTTTCTGGAGTGCTCAACACCGGTCCTAGTTGCAAACCAGATTGTTAATGCTGGAGCCAGCAAATCATATGTGGTGCGAACGCAGCTGCCTAGCATTATTCCACCATCTTACAAGGGTTCAAGCATTCGCTATCTGTACTATATTAAAAGTGCATTAACCGGAGAGTGGATAATATATGAAAATGGGCAATCTCGTGCGGAGATCAAAAATGATGTCACAGATTTGGAAGTTCGTATTCCATTACAATTATGGATAAACCAGAAAAGTAGTGCCTTTCCAATGGATGATGATATTGTTCCCTTAACTACTGTACAATTGGATATATTTTGGAAAGAGATGGATGGAGATGCTGATTGGATTAGAGCAAATGATATGTATGATGGAGTTGAGGATGGCTATGACAGCTCAAGAGATGACATCTCATCAGTTTCTTCTTATAACCCCATGAGAGAGAGTCTACACAGAGGCTTTGGAAGTTCACTGTCATTGCGATCTTCTTCTGCAAGATCATTGTCCAGGGATGCTTCTACTTTAGAAGGTTTCCGAACAAGTTTATCTTCAAATATGGCACTTCCTAGGCTGTCTGTTGCTGAAGTGTTGTCTGATTCTGGTGCTGATGTCTTGTCAACCCAGAAGTCATTTGCGATTGTCTCCCCAAATGAGCAACAGAAGCTGCGAAAGACATTTTCTGCAGAAGATGATGTGGGAGTATCCTCTTCACCTGAAGCTGGGGCTGTAGAATCTTTATCATCAGAAGGCTTTATTAGAGGAAGGTCTTATAATATCCGACTTGATGATCAAGTTTTGCTTAAATTTTCCCCTAGAAATTCCGACTCAACTTATTACTTCAGTGATATGATAGGTGGCACTCTCACTTTCTTTCATGAAGGAGCTAGGAGATGCCTTGAGATCTCAATAACATTGGAAACTTCGGAAACTATAAATCGGCGATTTGTCCACCCTTCTAGAAGGAATTCACCTACAATCACAAAGGTTCAGAGTGATCATCATGAGGTTGTTGCAGATTTGGTGCAGACAAGCTTTCTTTTTTCTATCCCCATGGATGGTCCAATGTCCTTCTCAACTCAACATGTATCTGTGCAGTGGGTTCTCCGCTTTGAATTTTTCACAACTCCAAAGCATGTAGATTGGAAAAAGTATGAGCATCCTCTTCTAATTGAGGGAAGGGAAAAAACGGAATGGGTTCTTCCAATTACTGTACATGCTCCACCACCAAGAGGAGCTCCTGCTTCTGGCACAAGAAGTGAGAAACTTTTCTCTTTGGATCCTATGTGGGTACACAATTGA
>Glyma07g12813.1 sequence type=predicted peptide gene model=Glyma07g12813 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSGRFSFFGGGGDSGAVVDNTNSSPSKCGEEQLAVVQPTLKLETDRQVYRPGDPVIVTIQISNPAKGYSFLMERLGFEIRGIEKLDTQWFATQKPMPGSKQKRGEHAFLECSTPVLVANQIVNAGASKSYVVRTQLPSIIPPSYKGSSIRYLYYIKSALTGEWIIYENGQSRAEIKNDVTDLEVRIPLQLWINQKSSAFPMDDDIVPLTTVQLDIFWKEMDGDADWIRANDMYDGVEDGYDSSRDDISSVSSYNPMRESLHRGFGSSLSLRSSSARSLSRDASTLEGFRTSLSSNMALPRLSVAEVLSDSGADVLSTQKSFAIVSPNEQQKLRKTFSAEDDVGVSSSPEAGAVESLSSEGFIRGRSYNIRLDDQVLLKFSPRNSDSTYYFSDMIGGTLTFFHEGARRCLEISITLETSETINRRFVHPSRRNSPTITKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFTTPKHVDWKKYEHPLLIEGREKTEWVLPITVHAPPPRGAPASGTRSEKLFSLDPMWVHN* >Glyma07g12813.2 sequence type=predicted peptide gene model=Glyma07g12813 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSGRFSFFGGGGDSGAVVDNTNSSPSKCGEEQLAVVQPTLKLETDRQVYRPGDPVIVTIQISNPAKGYSFLMERLGFEIRGIEKLDTQWFATQKPMPGSKQKRGEHAFLECSTPVLVANQIVNAGASKSYVVRTQLPSIIPPSYKGSSIRYLYYIKSALTGEWIIYENGQSRAEIKNDVTDLEVRIPLQLWINQKSSAFPMDDDIVPLTTVQLDIFWKEMDGDADWIRANDMYDGVEDGYDSSRDDISSVSSYNPMRESLHRGFGSSLSLRSSSARSLSRDASTLEGFRTSLSSNMALPRLSVAEVLSDSGADVLSTQKSFAIVSPNEQQKLRKTFSAEDDVGVSSSPEAGAVESLSSEGFIRGRSYNIRLDDQVLLKFSPRNSDSTYYFSDMIGGTLTFFHEGARRCLEISITLETSETINRRFVHPSRRNSPTITKVQSDHHEVVADLVQTSFLFSIPMDGPMSFSTQHVSVQWVLRFEFFTTPKHVDWKKYEHPLLIEGREKTEWVLPITVHAPPPRGAPASGTRSEKLFSLDPMWVHN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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