Glyma07g12280 - SoyBase

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Report for Sequence Feature Glyma07g12280

Feature Type:	gene_model
Chromosome:	Gm07
Start:	10563611
stop:	10567133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g12280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07525	AT	Annotation by Michelle Graham. TAIR10: autophagocytosis-associated family protein \| chr3:2399277-2400380 REVERSE LENGTH=225	SoyBase	E_val: 5.00E-71	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004839	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin activating enzyme activity	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG4741	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12866	Panther	AUTOPHAGOCYTOSIS PROTEIN AUT1-RELATED	JGI		ISS
PF03987	PFAM	Autophagocytosis associated protein, active-site domain	JGI		ISS
UniRef100_B9SMR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transporter, putative n=1 Tax=Ricinus communis RepID=B9SMR7_RICCO	SoyBase	E_val: 2.00E-80	ISS
UniRef100_I1KJB2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJB2_SOYBN	SoyBase	E_val: 8.00E-176	ISS

Expression Patterns of Glyma07g12280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g12280 not represented in the dataset	Glyma07g12280 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g12280

Paralog	Evidence	Comments
Glyma03g23850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g12280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g124300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g12280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g12280

Limit To All Plant Sequences

>Glyma07g12280.2   sequence type=transcript   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAATTCTTCCCAAAGTTGTCACAAAACGACTGTGTTTCACGCTGCCCATTTCTGAATAAACGAAAAAAACGTGTCCATCGTTGCCCAATAATACACGTTGTTATTGTTTGAACTCCACCCACTCACGCTCGTTCCTTTCAACCCTAGAAATTGCAATAGGAGAGGTATGGACTTACAAGGTGCTGTTAAGGACATAATTGCTTGGGATGGTACTCTCTCTTCAAGTGATTTTTCCCTTTCTGCTCATACATTTTCTGAGAAGTGGAAAAGGTTCAATCCTTCCTTTCCTCCATGGCAGTGGATCCCATGTTTAAAACATCATTTGGTTGCTTCTCATAAGGTGGAAGGATACTTATCCCTGGAGAACATGTGCCATATCAAATCAAGTGAGGAAGAAGAGAGTGATAGAAGTCTGACATGGAAAGAAGAGAGCAACATCTCACAGAGAGAAGAGCCCTTTGATAATGCAGCTTTAGTATGTCCAGAGCATGAAGTAAACCAGTACGATTTTCATATCGTCTACAGTGCTACATATAGAGTTCCAGTCTTGTACTTCCGTTCATATCATGGTGATGGGCAACTTTTGCCGTTTGATGAAATTGAAAAGGACCTTCCTGGTCACTCTGCGAAGTTACGATCAGAATCCAAATGGACATTTATATCTCATGAGGAACATCCATATTTGAACAGGCCATGGTACAAATTACATCCATGTGGGACAAGTGACTGGATGAAGCTTCTCTTCAATGGTGATTCATCTTTGAATAAAAAGGATTTTGTTATTGAACAATATCTGGTTTCCTGGTTCTCGGCCATTGGGCTAGTCGTCGGTCTTAAAATGCCTTTGGAAATGCTGGATACTGTAGTTTCTAACAATTCTTAGACGCTTATTCATACTTACAGAAAAATAAAATAAAGGAAAAGAGGACAAAGAAAAAGTTTTTGCACGCCACTTACAATTAACTGTTGCAGTTGTCATTTGTGAATAGCAATTTTACATTTTTACTCAAACATTAAATGAATGGTTAAATATGTATTTTTACATGCTTCTGCTGGTAAATGGGGTATGCAATTGTAATTTGATATGCGATGATGAGTGCTTCTGACTGATGAAAAGGTTTTTCATTTCAGTTCGTCTTTAGT

>Glyma07g12280.3   sequence type=transcript   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTTTTAATAATTTTCAAACTGAGATAGAAAACCATTATAGTTCAGTTACCCTTCATTTCGATCTCGATCTTTCTCCAACCCCTAACATCCTAATCCTAAATTGGTAAACCCTAATCCCAAATTTCCTTGTCCTTCATCGTTAGTTCAGTTAATGATTCCAAGGTATGGACTTACAAGGTGCTGTTAAGGACATAATTGCTTGGGATGGTACTCTCTCTTCAAGTGATTTTTCCCTTTCTGCTCATACATTTTCTGAGAAGTGGAAAAGGTTCAATCCTTCCTTTCCTCCATGGCAGTGGATCCCATGTTTAAAACATCATTTGGTTGCTTCTCATAAGGTGGAAGGATACTTATCCCTGGAGAACATGTGCCATATCAAATCAAGTGAGGAAGAAGAGAGTGATAGAAGTCTGACATGGAAAGAAGAGAGCAACATCTCACAGAGAGAAGAGCCCTTTGATAATGCAGCTTTAGTATGTCCAGAGCATGAAGTAAACCAGTACGATTTTCATATCGTCTACAGTGCTACATATAGAGTTCCAGTCTTGTACTTCCGTTCATATCATGGTGATGGGCAACTTTTGCCGTTTGATGAAATTGAAAAGGACCTTCCTGGTCACTCTGCGAAGTTACGATCAGAATCCAAATGGACATTTATATCTCATGAGGAACATCCATATTTGAACAGGCCATGGTACAAATTACATCCATGTGGGACAAGTGACTGGATGAAGCTTCTCTTCAATGGTGATTCATCTTTGAATAAAAAGGATTTTGTTATTGAACAATATCTGGTTTCCTGGTTCTCGGCCATTGGGCTAGTCGTCGGTCTTAAAATGCCTTTGGAAATGCTGGATACTGTAGTTTCTAACAATTCTTAGACGCTTATTCATACTTACAGAAAAATAAAATAAAGGAAAAGAGGACAAAGAAAAAGTTTTTGCACGCCACTTACAATTAACTGTTGCAGTTGTCATTTGTGAATAGCAATTTTACATTTTTACTCAAACATTAAATGAATGGTTAAATATGTATTTTTACATGCTTCTGCTGGTAAATGGGGTATGCAATTGTAATTTGATATGCGATGATGAGTGCTTCTGACTGATGAAAAGGTTTTTCATTTCAGTTCGTCTTTAGT

Coding sequences of Glyma07g12280

Limit To All Plant Sequences

>Glyma07g12280.1   sequence type=CDS   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTACAAGGTGCTGTTAAGGACATAATTGCTTGGGATGGTACTCTCTCTTCAAGTGATTTTTCCCTTTCTGCTCATACATTTTCTGAGAAGTGGAAAAGGTTCAATCCTTCCTTTCCTCCATGGCAGTGGATCCCATGTTTAAAACATCATTTGGTTGCTTCTCATAAGGTGGAAGGATACTTATCCCTGGAGAACATGTGCCATATCAAATCAAGTGAGGAAGAAGAGAGTGATAGAAGTCTGACATGGAAAGAAGAGAGCAACATCTCACAGAGAGAAGAGCCCTTTGATAATGCAGCTTTAGTATGTCCAGAGCATGAAGTAAACCAGTACGATTTTCATATCGTCTACAGTGCTACATATAGAGTTCCAGTCTTGTACTTCCGTTCATATCATGGTGATGGGCAACTTTTGCCGTTTGATGAAATTGAAAAGGACCTTCCTGGTCACTCTGCGAAGTTACGATCAGAATCCAAATGGACATTTATATCTCATGAGGAACATCCATATTTGAACAGGCCATGGTACAAATTACATCCATGTGGGACAAGTGACTGGATGAAGCTTCTCTTCAATGGTGATTCATCTTTGAATAAAAAGGATTTTGTTATTGAACAATATCTGGTTTCCTGGTTCTCGGCCATTGGGCTAGTCGTCGGTCTTAAAATGCCTTTGGAAATGCTGGATACTGTAGTTTCTAACAATTCTTAG

>Glyma07g12280.2   sequence type=CDS   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTACAAGGTGCTGTTAAGGACATAATTGCTTGGGATGGTACTCTCTCTTCAAGTGATTTTTCCCTTTCTGCTCATACATTTTCTGAGAAGTGGAAAAGGTTCAATCCTTCCTTTCCTCCATGGCAGTGGATCCCATGTTTAAAACATCATTTGGTTGCTTCTCATAAGGTGGAAGGATACTTATCCCTGGAGAACATGTGCCATATCAAATCAAGTGAGGAAGAAGAGAGTGATAGAAGTCTGACATGGAAAGAAGAGAGCAACATCTCACAGAGAGAAGAGCCCTTTGATAATGCAGCTTTAGTATGTCCAGAGCATGAAGTAAACCAGTACGATTTTCATATCGTCTACAGTGCTACATATAGAGTTCCAGTCTTGTACTTCCGTTCATATCATGGTGATGGGCAACTTTTGCCGTTTGATGAAATTGAAAAGGACCTTCCTGGTCACTCTGCGAAGTTACGATCAGAATCCAAATGGACATTTATATCTCATGAGGAACATCCATATTTGAACAGGCCATGGTACAAATTACATCCATGTGGGACAAGTGACTGGATGAAGCTTCTCTTCAATGGTGATTCATCTTTGAATAAAAAGGATTTTGTTATTGAACAATATCTGGTTTCCTGGTTCTCGGCCATTGGGCTAGTCGTCGGTCTTAAAATGCCTTTGGAAATGCTGGATACTGTAGTTTCTAACAATTCTTAG

>Glyma07g12280.3   sequence type=CDS   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTACAAGGTGCTGTTAAGGACATAATTGCTTGGGATGGTACTCTCTCTTCAAGTGATTTTTCCCTTTCTGCTCATACATTTTCTGAGAAGTGGAAAAGGTTCAATCCTTCCTTTCCTCCATGGCAGTGGATCCCATGTTTAAAACATCATTTGGTTGCTTCTCATAAGGTGGAAGGATACTTATCCCTGGAGAACATGTGCCATATCAAATCAAGTGAGGAAGAAGAGAGTGATAGAAGTCTGACATGGAAAGAAGAGAGCAACATCTCACAGAGAGAAGAGCCCTTTGATAATGCAGCTTTAGTATGTCCAGAGCATGAAGTAAACCAGTACGATTTTCATATCGTCTACAGTGCTACATATAGAGTTCCAGTCTTGTACTTCCGTTCATATCATGGTGATGGGCAACTTTTGCCGTTTGATGAAATTGAAAAGGACCTTCCTGGTCACTCTGCGAAGTTACGATCAGAATCCAAATGGACATTTATATCTCATGAGGAACATCCATATTTGAACAGGCCATGGTACAAATTACATCCATGTGGGACAAGTGACTGGATGAAGCTTCTCTTCAATGGTGATTCATCTTTGAATAAAAAGGATTTTGTTATTGAACAATATCTGGTTTCCTGGTTCTCGGCCATTGGGCTAGTCGTCGGTCTTAAAATGCCTTTGGAAATGCTGGATACTGTAGTTTCTAACAATTCTTAG

Predicted protein sequences of Glyma07g12280

Limit To All Plant Sequences

>Glyma07g12280.1   sequence type=predicted peptide   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLQGAVKDIIAWDGTLSSSDFSLSAHTFSEKWKRFNPSFPPWQWIPCLKHHLVASHKVEGYLSLENMCHIKSSEEEESDRSLTWKEESNISQREEPFDNAALVCPEHEVNQYDFHIVYSATYRVPVLYFRSYHGDGQLLPFDEIEKDLPGHSAKLRSESKWTFISHEEHPYLNRPWYKLHPCGTSDWMKLLFNGDSSLNKKDFVIEQYLVSWFSAIGLVVGLKMPLEMLDTVVSNNS*

>Glyma07g12280.2   sequence type=predicted peptide   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLQGAVKDIIAWDGTLSSSDFSLSAHTFSEKWKRFNPSFPPWQWIPCLKHHLVASHKVEGYLSLENMCHIKSSEEEESDRSLTWKEESNISQREEPFDNAALVCPEHEVNQYDFHIVYSATYRVPVLYFRSYHGDGQLLPFDEIEKDLPGHSAKLRSESKWTFISHEEHPYLNRPWYKLHPCGTSDWMKLLFNGDSSLNKKDFVIEQYLVSWFSAIGLVVGLKMPLEMLDTVVSNNS*

>Glyma07g12280.3   sequence type=predicted peptide   gene model=Glyma07g12280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLQGAVKDIIAWDGTLSSSDFSLSAHTFSEKWKRFNPSFPPWQWIPCLKHHLVASHKVEGYLSLENMCHIKSSEEEESDRSLTWKEESNISQREEPFDNAALVCPEHEVNQYDFHIVYSATYRVPVLYFRSYHGDGQLLPFDEIEKDLPGHSAKLRSESKWTFISHEEHPYLNRPWYKLHPCGTSDWMKLLFNGDSSLNKKDFVIEQYLVSWFSAIGLVVGLKMPLEMLDTVVSNNS*

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