Glyma07g12190 - SoyBase

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Report for Sequence Feature Glyma07g12190

Feature Type:	gene_model
Chromosome:	Gm07
Start:	10510385
stop:	10515651
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g12190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29130	AT	Annotation by Michelle Graham. TAIR10: hexokinase 1 \| chr4:14352338-14354865 REVERSE LENGTH=496	SoyBase	E_val: 0	ISS
GO:0010148	GO-bp	Annotation by Michelle Graham. GO Biological Process: transpiration	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010255	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose mediated signaling pathway	SoyBase	N/A	ISS
GO:0012501	GO-bp	Annotation by Michelle Graham. GO Biological Process: programmed cell death	SoyBase	N/A	ISS
GO:0019320	GO-bp	Annotation by Michelle Graham. GO Biological Process: hexose catabolic process	SoyBase	N/A	ISS
GO:0090332	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal closure	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004340	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucokinase activity	SoyBase	N/A	ISS
GO:0004396	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hexokinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0008865	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fructokinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG1369	KOG	Hexokinase	JGI		ISS
PTHR19443	Panther	HEXOKINASE	JGI		ISS
PF00349	PFAM	Hexokinase	JGI		ISS
PF03727	PFAM	Hexokinase	JGI		ISS
UniRef100_G7L7F0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hexokinase n=1 Tax=Medicago truncatula RepID=G7L7F0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KJB0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJB0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g12190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g12190 not represented in the dataset	Glyma07g12190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g12190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g124500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g12190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g12190

Limit To All Plant Sequences

>Glyma07g12190.1   sequence type=CDS   gene model=Glyma07g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGTGGCGGTCGGAACCGCGGTGGTTTGCGCGGCGGCGGCGTGTGTCGCGGCGGCTCTGGTGGTGCGCCACCGCACGAGGAGCTCCGGAAAGTGGGGTCGCGCGACGGCTATTGCGAAAGAGCTTGAGGAGCAGTGTTGGACCCCAATTTCGAAGCTGAGACAGGTTGCTGATGCCCTGGACGTTGAGATGCACGCTGGTCTTGCTTCTGAAGGTGGATGTAAGCTCAAGATGTTGATCACTTATGTTGATAATCTCCCTTCTGGGGATGAGAAAGGACTCTTTTATGCATTAGACCTTGGTGGCACAAACTTCCGAACCCTTCGAGTGCATTTAGGTGGGAAGGAGAAAGGTGTTGTCAAAATAGAGTCTGAAGAAGTTTCCATTCCTCCTCATTTGATGACTGGTTCTTCACAAGAATTATTTGATTTTATAGCATCTAAACTTGCAAAGTTTGTTAGTTCTGAGCCTGAAGAGTTACACCCTCCCCCTGGCAGACAAAGGGAACTGGGTTTTACATTCTCATTTCCAGTGAAGCAAACATCCATAGCATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAGGATGCGGTTGGAGAAGATGTGGTGGGTGGACTAACCAAGTCCTTAGAAAAAATTGGTCTGGATATGCGTGTTGCAGCTCTAGTTAATGACACAGTTGGAACTGTGGCTAGAGCTAGATTCAGCAATCAGGATGTCATTGCTGGAGTGATTCTTGGTACAGGGACAAATGCAGCTTATGTAGAGTGTGCACATGCAATTCCAAAATGGCAAGGTCTTCTACCAAAATCAGGAGAGATGGTTATTAACATGGAGTGGGGTAATTTCTGTTCCTCACATCTTCCTCTAACAGAATATGATCAAGCTCTAGATGCGGAGAGCTTAAACCCTGGAGAACAGATTTTTGAGAAGATAGTTTCTGGTATGTATTTAGGTGACATTGTAAGGAGAGTTTTGTTGAAGATGGCGGAAGAAGTTGACTTCTTTGGAGATACTGTTCCTCCAAAATTGAGAATTCCTTTCGTTCTTAGGACACCTGACATGTCTGCAATGCATCATGATACATCTTCAGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGATCAATAACACATCCCTGAAAACAAGGAAGATTGTTGTGGAACTCTGTGATATTGTTGCTACTCGGGGAGCCCGCCTTTCAGCTGCTGGTATTTTTAGCATCCTCAAGAAAATAGGAAGAGACACAGTAAAGGACGGGAAGAAACAGAAATCAGTCGTAGCACTGGATGGAGGATTGTTTGAACACTACGCTAAATTCAGAAGTTCCTTGGAGAGTACACTAAAGGAGTTGTTGGGTGATGAGGCAGATGAGACAGTTGGCATTGAACATTCTAATGATGGCTCTGGAATTGGAGCAGCCCTCCTGGCAGCTTCTAACTCCCAGTATTTGGGAGTGCAGGAGTCCTGA

Predicted protein sequences of Glyma07g12190

Limit To All Plant Sequences

>Glyma07g12190.1   sequence type=predicted peptide   gene model=Glyma07g12190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKVAVGTAVVCAAAACVAAALVVRHRTRSSGKWGRATAIAKELEEQCWTPISKLRQVADALDVEMHAGLASEGGCKLKMLITYVDNLPSGDEKGLFYALDLGGTNFRTLRVHLGGKEKGVVKIESEEVSIPPHLMTGSSQELFDFIASKLAKFVSSEPEELHPPPGRQRELGFTFSFPVKQTSIASGTLIKWTKGFNIEDAVGEDVVGGLTKSLEKIGLDMRVAALVNDTVGTVARARFSNQDVIAGVILGTGTNAAYVECAHAIPKWQGLLPKSGEMVINMEWGNFCSSHLPLTEYDQALDAESLNPGEQIFEKIVSGMYLGDIVRRVLLKMAEEVDFFGDTVPPKLRIPFVLRTPDMSAMHHDTSSDLKVVGNKLKDILEINNTSLKTRKIVVELCDIVATRGARLSAAGIFSILKKIGRDTVKDGKKQKSVVALDGGLFEHYAKFRSSLESTLKELLGDEADETVGIEHSNDGSGIGAALLAASNSQYLGVQES*

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