Glyma07g11860 - SoyBase

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Report for Sequence Feature Glyma07g11860

Feature Type:	gene_model
Chromosome:	Gm07
Start:	10127280
stop:	10130999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g11860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80190	AT	Annotation by Michelle Graham. TAIR10: partner of SLD five 1 \| chr1:30159476-30161115 FORWARD LENGTH=201	SoyBase	E_val: 3.00E-96	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0000811	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: GINS complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3303	KOG	Predicted alpha-helical protein, potentially involved in replication/repair	JGI		ISS
PTHR12914	Panther	PARTNER OF SLD5	JGI		ISS
PF05916	PFAM	GINS complex subunit Sld5	JGI		ISS
UniRef100_G7IYB5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA replication complex GINS protein PSF1 n=1 Tax=Medicago truncatula RepID=G7IYB5_MEDTR	SoyBase	E_val: 7.00E-107	ISS
UniRef100_I1KJ81	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJ81_SOYBN	SoyBase	E_val: 7.00E-146	ISS

Expression Patterns of Glyma07g11860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g11860 not represented in the dataset	Glyma07g11860 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g11860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g105000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g11860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g11860

Limit To All Plant Sequences

>Glyma07g11860.1   sequence type=CDS   gene model=Glyma07g11860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGGGAGTAAAGCTAGCCAACTTGTGAAAGAATTTGCAAGTGGAGAAAAAGGTCAGCTTACCACATACAATAATGACTTGATTCGAGAAGTAGTTGCAGAGTGTACTCAACATCACCTTGATTTTCAGTCCTTGATAAGGAAGATGCAGGAAGAAGGTTTGGATATCCAAACGGCAAAAAATGCAGATCACTACGGAGCCCTTATCCACCATCTTGCTGTAGTCCGAAATAAACGTTGCCTAATGGCCTATATGTATAATCGAGCAGAAATTATAAGAAACTTGTTATGGAAGATAGGGCACATGCTTCCTCAAGAAATTAAAGTAAAGCTTTGTAGTACGGAGGAAGAACATTTCAAGAATCATTCTAAAGCACTGAAAAATTATATGTTGAAAGTGGAGGTTGATTTGACTGTGGATATGGTACCGCCAAAAGATCCATACATCAAAGTGAGGGTCATTGATGACATTGGAGAAGGCATTCTGCTCAGTGATGATAAGAGTGCCAATTTTGCCCTCCATTCAATGCACCTTCTGAAACGAACTGATGCAGAGCAATTTATCGCACAGGGCAAAATGGAAGAGCTCAAGGGTTGA

Predicted protein sequences of Glyma07g11860

Limit To All Plant Sequences

>Glyma07g11860.1   sequence type=predicted peptide   gene model=Glyma07g11860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYGSKASQLVKEFASGEKGQLTTYNNDLIREVVAECTQHHLDFQSLIRKMQEEGLDIQTAKNADHYGALIHHLAVVRNKRCLMAYMYNRAEIIRNLLWKIGHMLPQEIKVKLCSTEEEHFKNHSKALKNYMLKVEVDLTVDMVPPKDPYIKVRVIDDIGEGILLSDDKSANFALHSMHLLKRTDAEQFIAQGKMEELKG*

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