SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G10170 | AT | Annotation by Michelle Graham. TAIR10: NF-X-like 1 | chr1:3333925-3337491 REVERSE LENGTH=1188 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0009610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus | SoyBase | N/A | ISS |
| GO:0009642 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light intensity | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to microbial phytotoxin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1952 | KOG | Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains | JGI | ISS | |
| PTHR12360 | Panther | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 (NFX1) | JGI | ISS | |
| PF01422 | PFAM | NF-X1 type zinc finger | JGI | ISS | |
| UniRef100_G7KQB2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional repressor NF-X1-like protein n=1 Tax=Medicago truncatula RepID=G7KQB2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337C37 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337C37 related cluster n=1 Tax=unknown RepID=UPI0002337C37 | SoyBase | E_val: 0 | ISS |
|
Glyma07g11834 not represented in the dataset |
Glyma07g11834 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g30343 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g104700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g11834.1 sequence type=CDS gene model=Glyma07g11834 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTCTCAAATTCGGAGAGAAAGAAGGGAATGGTCCAGGGTTCCACCACAAGGTGCTACTCGTCAAGAATGGGTCCCCAGAGGGGCTGCTGCTGCTGCTGCGTCCACCAATGTCGCTCAGCCATCAAATTTGCATTCAAACAACAATGCTGATGCTGGTTCTTCCAATCTAGGGGTGGCTGTTGCTGCTCCGTCCGTGAGTCGCAGTAGAAGCAACAATCATGGGAATGATGTTGGTTCTTCCAATCAAGGGGTGGCTGTTGCTGCTCTGCCGGTCAGTCGGGGTAGAAGCAACAATCATGGGAATGATGCCGGGTTTTCCAATCAAGGGGTGGCTGTTGCTGCTCTGCCGGTGAGTCACGGTAGAAGCAACAATCATGGAAATGATGCCGGGCCTTCCAATCAAGGGGTGGCTGTTGCTTCTCCGCCGGTGAGTCACGGTAGAAGCAACAATCCTGGGAATGGTGCTGGTTCTTCCAATCAAGGTTTGGCAGTTGCTGCTCCGCCGGTGAATCGTGGTAGAAGCAAAAATCATGGGAAAGATTCTGTCTCTTCCAATCAAGGGGTGGCTGTTGCTGCACTGGGGAGTCGTGGTAGAAGCAACAATCATGGGAGTCATTGGATGGAAATGGAAAAGGATAAGGGGAGCAGGAGTGGGAGTCAGGTGGAGAAGGGATTGAGAGTGGGAGTCAGAGACTCTAGTTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTCATGAAAGGTACCGTGGAGTGCATGATTTGCTATGAGATGGTCCAGAGGTCTGTGCCGGTTTGGTCTTGCTCCAGCTGTTACTCTATCTTTCACCTGAACTGCATCAAGAAGTGGGCTAGGGCACCAATCTCAAGTGATTTGTCCTTGTCCGTGGAGAAGAATCACGAGCTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTGAAATTTACCTCTTCAAAGGAGATTAGATATGTTTGCTTTTGTGGAAAGAGGATAGACCCTCCATCTGATTTGTATCTGACACCACATTCATGTGGAGAACCATGTGGGAAGCCTCTTCAGAGGGAGGTGTTGGTTCCTGGAGGGAATAGGGATGATCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCAGGACCATGCCCTCCCTGTAAAGCATTTGCTCCTCCGCGGTTGTGCCCTTGTGGGAAGAAAAATATTACCACCCGATGCTCTGATCGGCAGTCTGTTCTTACCTGTGGGCAGTGCTGTGGTAAACTTCTTGAATGTGGGCGCCATCGCTGTGAACGCATTTGTCATGTGGGTTCATGTGATCCTTGTAAGGTTCCAAGCAGTGCAACTTGCTTTTGCAGTAAAAATATGGAGGTTGTTCTTTGTGGGGACATGACTGTGAAGGGTGAAATTGAAGCAAAAGGTGGGGTTTTTTCTTGTAGTTCCTATTGTCTAAAGATACTTGGTTGTGGTAATCATGTCTGTAGTGAGATTTGTCATCCAGGAAGCTGTGTGGAATGTGAATTGTTACCTAGCCGGGTTAAGACATGCTGTTGTGGGAAAACAAGGTTGGAGAATGAACGCCAGAGTTGTTTGGATCCGATACCTACCTGCTCGAAAGTATGTGGCAAGCTGCTTCATTGTGGCATGCATAGTTGTAAAGAGGCATGCCATGTTGGGGAGTGTCCACCTTGTTTGGTTGAAGTTTCACAGAAGTGCTGTTGTGGCTCAACTTCCCGAACTGTGGAGTGCTATAAGACTATGATGGAGAATGAGAAATTTATGTGTGAAAAGTCTTGTGGGATAAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCATTTTCTAATTCAAATCATTATAATACCTTTAGTGGGGATTGGGTTCCTCACTTTTGTTCCATGCCATGTGGAAAGAAGCTAAGGTGTGGCCAGCATGTGTGTGAATGTCTGTGTCACAGTGGTCATTGTCCACCTTGTTTCCAAACAATCTTTAATGAATTGGCTTGTGCTTGTGGTAGGACTTCAATACCTCCTCCTCTACCATGTGGTACACCGCCTCCCTCATGTCAGCTTCCATGCTCAGTTCCTCAGCCATGTGGTCATTCAGTCTCACACAGTTGCCATTTTGGAGACTGTCCTCCTTGTTCAGTGCCTGTTGCAAAAGAATGTATTGGCGGGCATGTAGTTCTTAGAAACATACCTTGTGGTTCGAAGGATATTAGATGCAATCATCCCTGTGGGAAGACCAGGCAGTGTGGTTTACATGCATGTGGCAGAACATGTCACCCTCCACCTTGTGATAATCTATCTGGTGTTGTGCAAGGTTTCAAAGCACCATGTGGCCAAACATGTGGTGCTCCAAGAAGAAGCTGCAGGCACACATGTATGGCTCCTTGTCACCCTTCATCTCCATGCCCAGATATAAGGTGTGAATTCCCTGTTACAATCACTTGCTCTTGTGGCCGTATAACGGCAAATGTTCCTTGTGATGTTGGTGGTAGCAGTAGCAATTATAATGCTGATGCCATACATGAAGCTTCCATTATTCAAACATTGCCTGTACCTCTTCAACCAGTTGATGCAAATGGCAAGAAAGTTCCCCTAGGACAAAGAAAGCTGATATGTGATGATGAATGTTCTAAGCTGGAACGCAAAAGGGTTCTCGCGGATGCTTTTGACATTACTGCTCCAAATCTGGACTCTCTCCATTTTGGTGATAACTCTCTTTCTTCTGAATTGCTTTTAGATTTTTTCAGGCGTGAGCCAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAAATTTTAGTACTTGGCAAGACTAGAGGAACAGGAACTACACATGGTTTAAAAGTCCACATCTTTTGTCCCATGCTGAAGGAAAAAAGAGATGCAGTGAGGTTGATTGCTGATAGATGGAAGCTTGCAATCACTGCTGCCGGCTGGGAGCCAAAGCGATTTATTGTAATTTCTGTTACCCCAAAATCAAAGGCCCCGGCTCGTGTGATAGGGGTTAAGGGTACTACAACTTTAAATGTGCCTCTTCCTCCTGTATTTGATCCGTTGGTTGACATGGACCTGCGACTTGTTGTCTCATTTCCAGACTTACCAAGGGATACTGAAATTAATTCCTTGGTTTTGAGGTTTGGTGGCGAGTGTGAGCTTGTTTGGTTGAACGACAAGAATGCTTTGGCTGTTTTTCATGATCCTGCTCGAGCTGCAACTGCGATGAGGAGGTTGGATTATGCAACAGTTTATCAGGGAGCTGTTTTGGTTGCCCCGAATGCTGGGGCATTGGTGGCATCTTCAGCTACCAATGCCTGGGGAGGAGCTGGGGCAATGAAAGGAGGAGGAGCGCTGCCAGCATTGAAAGGTAACTCATGGAAAAAGGCTGTGGCTCAAGACTCTGGTTGGGAAGATTCTTGGGGTGGTGAAGAGTGGATTGCTGGTTCTGTGAATATCCAGCCATCTGTTTGGAAAAAGGAAGCACCTCTGGCTGCTTCTTTGAATCGTTGGAATGTCTTGGAGCAGGAATCGAGTTCAAGTTTGTCGTCTACAACTGTTAGAGCTGAAGTTTCTGGGAAGAAAACTGAAAATGCTGGTGAAGAAGGTGGCTCAAAGGAAGAGGAAAAGTTGGATGCAGCTTCTGAAGTAGTTGATGATTGGGAGAAGGCTTATGAATGA
>Glyma07g11834.1 sequence type=predicted peptide gene model=Glyma07g11834 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSQIRRERREWSRVPPQGATRQEWVPRGAAAAAASTNVAQPSNLHSNNNADAGSSNLGVAVAAPSVSRSRSNNHGNDVGSSNQGVAVAALPVSRGRSNNHGNDAGFSNQGVAVAALPVSHGRSNNHGNDAGPSNQGVAVASPPVSHGRSNNPGNGAGSSNQGLAVAAPPVNRGRSKNHGKDSVSSNQGVAVAALGSRGRSNNHGSHWMEMEKDKGSRSGSQVEKGLRVGVRDSSLPQLVQEIQEKLMKGTVECMICYEMVQRSVPVWSCSSCYSIFHLNCIKKWARAPISSDLSLSVEKNHELNWRCPGCQSVKFTSSKEIRYVCFCGKRIDPPSDLYLTPHSCGEPCGKPLQREVLVPGGNRDDLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQCCGKLLECGRHRCERICHVGSCDPCKVPSSATCFCSKNMEVVLCGDMTVKGEIEAKGGVFSCSSYCLKILGCGNHVCSEICHPGSCVECELLPSRVKTCCCGKTRLENERQSCLDPIPTCSKVCGKLLHCGMHSCKEACHVGECPPCLVEVSQKCCCGSTSRTVECYKTMMENEKFMCEKSCGIKKNCGRHRCSERCCPFSNSNHYNTFSGDWVPHFCSMPCGKKLRCGQHVCECLCHSGHCPPCFQTIFNELACACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSVSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNHPCGKTRQCGLHACGRTCHPPPCDNLSGVVQGFKAPCGQTCGAPRRSCRHTCMAPCHPSSPCPDIRCEFPVTITCSCGRITANVPCDVGGSSSNYNADAIHEASIIQTLPVPLQPVDANGKKVPLGQRKLICDDECSKLERKRVLADAFDITAPNLDSLHFGDNSLSSELLLDFFRREPKWVLAVEERCKILVLGKTRGTGTTHGLKVHIFCPMLKEKRDAVRLIADRWKLAITAAGWEPKRFIVISVTPKSKAPARVIGVKGTTTLNVPLPPVFDPLVDMDLRLVVSFPDLPRDTEINSLVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDYATVYQGAVLVAPNAGALVASSATNAWGGAGAMKGGGALPALKGNSWKKAVAQDSGWEDSWGGEEWIAGSVNIQPSVWKKEAPLAASLNRWNVLEQESSSSLSSTTVRAEVSGKKTENAGEEGGSKEEEKLDAASEVVDDWEKAYE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
