Glyma07g11540 - SoyBase

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Report for Sequence Feature Glyma07g11540

Feature Type:	gene_model
Chromosome:	Gm07
Start:	9720069
stop:	9725143
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g11540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G17980	AT	Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein \| chr3:6152417-6153115 FORWARD LENGTH=177	SoyBase	E_val: 6.00E-89	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1030	KOG	Predicted Ca2+-dependent phospholipid-binding protein	JGI		ISS
PTHR26357	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26357:SF5	Panther		JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
UniRef100_G7KPS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multiple C2 and transmembrane domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KPS8_MEDTR	SoyBase	E_val: 2.00E-103	ISS
UniRef100_I1KJ52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJ52_SOYBN	SoyBase	E_val: 1.00E-125	ISS

Expression Patterns of Glyma07g11540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g11540 not represented in the dataset	Glyma07g11540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g11540

Paralog	Evidence	Comments
Glyma09g30750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g11540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g102400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g11540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g11540

Limit To All Plant Sequences

>Glyma07g11540.4   sequence type=transcript   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACATGTTTGCATCAAGATTTCTGGAGAACGATGAAATCCAAATGGAAGCCTAACCATGTCTAAAAATTCAGTGAAAACCACCGTGACTGAGAAAGTATTTAAACAAAAGAAATGGAGGAATCAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCCGTTCGTGATGTTCGAAGCAGCGACCCCTATGTTGTCATCAAGATGTACCGCCAGAAACTAAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTGTTATAAATCCGAATCACAAAGTTAAACTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACATCTTGCCCTTTATAGAAGCCTTGAAGATGAACTTAACTGGCCTTGCAAATGGTACTGTAGTCACAAGAATACAACCAAGCAAGCATAATTGCCTGGTTGACGAGAGCTGCATAACTTATAGCAATGGCAAGGTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGATATATGATCTTATGGGGTGCTTGTGTATTAACAACTTCATGCATATAAGCTGGCTTTTGCCTTGTACTACCTAAGGTCAGGTTTATCTAAGACTTGTTGGGGAACTAACTGAACTTGTATTTATACCCGGTTTGTGATGCATTAGTACAGTTTAGAACTTTTAATTTTTCATGTTTAAAAATTTACCTTTTGGTCTCGGTGTGTTTTGGAAGGGGATTGACGCATTGATTTGGTTTCATATCCTGGGTGAAATATGCATGTCGCCTACGCTTCATAAGATGATAAAAAGAGTAATGTCTGCATACCTCCACTCTGGATCAAACTGTAACTGCATCATCTTTGTCATCATTTGATTGTAAATTTGTTTCACTTGAGACTGTATTTAAGTTAAGTGGTTTAAATTATTCTCACCCACATATGAATAAGGTGTACATATTACTTTCCTAATAAAAATTGAAAGGACA

>Glyma07g11540.5   sequence type=transcript   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCAAACCAAAGCAGCCGTTACCTCTCATTCCCACATGCAAAAAAAACGAACACAAAAACAAAACAAAATACAAATCAAAGATCACATTCTCCTTCTCCTTCTCCTTGTACCTGTGTTATTAAGGTTTCTCTTTCTTCTTCCAGAACCAATATCCCATTTCTGAAAGTATTTAAACAAAAGAAATGGAGGAATCAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCCGTTCGTGATGTTCGAAGCAGCGACCCCTATGTTGTCATCAAGATGTACCGCCAGAAACTAAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTGTTATAAATCCGAATCACAAAGTTAAACTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACATCTTGCCCTTTATAGAAGCCTTGAAGATGAACTTAACTGGCCTTGCAAATGGTACTGTAGTCACAAGAATACAACCAAGCAAGCATAATTGCCTGGTTGACGAGAGCTGCATAACTTATAGCAATGGCAAGGTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGATATATGATCTTATGGGGTGCTTGTGTATTAACAACTTCATGCATATAAGCTGGCTTTTGCCTTGTACTACCTAAGGTCAGGTTTATCTAAGACTTGTTGGGGAACTAACTGAACTTGTATTTATACCCGGTTTGTGATGCATTAGTACAGTTTAGAACTTTTAATTTTTCATGTTTAAAAATTTACCTTTTGGTCTCGGTGTGTTTTGGAAGGGGATTGACGCATTGATTTGGTTTCATATCCTGGGTGAAATATGCATGTCGCCTACGCTTCATAAGATGATAAAAAGAGTAATGTCTGCATACCTCCACTCTGGATCAAACTGTAACTGCATCATCTTTGTCATCATTTGATTGTAAATTTGTTTCACTTGAGACTGTATTTAAGTTAAGTGGTTTAAATTATTCTCACCCACATATGAATAAGGTGTACATATTACTTTCCTAATAAAAATTGAAAGGACAGTGGTTTGCATCTTGATTTAAG

Coding sequences of Glyma07g11540

Limit To All Plant Sequences

>Glyma07g11540.3   sequence type=CDS   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAATCAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCCGTTCGTGATGTTCGAAGCAGCGACCCCTATGTTGTCATCAAGATGTACCGCCAGAAACTAAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTGTTATAAATCCGAATCACAAAGTTAAACTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACATCTTGCCCTTTATAGAAGCCTTGAAGATGAACTTAACTGGCCTTGCAAATGGTACTGTAGTCACAAGAATACAACCAAGCAAGCATAATTGCCTGGTTGACGAGAGCTGCATAACTTATAGCAATGGCAAGGTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGA

>Glyma07g11540.4   sequence type=CDS   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAATCAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCCGTTCGTGATGTTCGAAGCAGCGACCCCTATGTTGTCATCAAGATGTACCGCCAGAAACTAAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTGTTATAAATCCGAATCACAAAGTTAAACTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACATCTTGCCCTTTATAGAAGCCTTGAAGATGAACTTAACTGGCCTTGCAAATGGTACTGTAGTCACAAGAATACAACCAAGCAAGCATAATTGCCTGGTTGACGAGAGCTGCATAACTTATAGCAATGGCAAGGTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGA

>Glyma07g11540.5   sequence type=CDS   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAATCAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCCGTTCGTGATGTTCGAAGCAGCGACCCCTATGTTGTCATCAAGATGTACCGCCAGAAACTAAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTGTTATAAATCCGAATCACAAAGTTAAACTGACTGTGTATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACATCTTGCCCTTTATAGAAGCCTTGAAGATGAACTTAACTGGCCTTGCAAATGGTACTGTAGTCACAAGAATACAACCAAGCAAGCATAATTGCCTGGTTGACGAGAGCTGCATAACTTATAGCAATGGCAAGGTTGTCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGA

Predicted protein sequences of Glyma07g11540

Limit To All Plant Sequences

>Glyma07g11540.3   sequence type=predicted peptide   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMYRQKLKTRVIKKDVNPEWNEDLTLSVINPNHKVKLTVYDHDTFSKDDKMGDAEFDILPFIEALKMNLTGLANGTVVTRIQPSKHNCLVDESCITYSNGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGI*

>Glyma07g11540.4   sequence type=predicted peptide   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMYRQKLKTRVIKKDVNPEWNEDLTLSVINPNHKVKLTVYDHDTFSKDDKMGDAEFDILPFIEALKMNLTGLANGTVVTRIQPSKHNCLVDESCITYSNGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGI*

>Glyma07g11540.5   sequence type=predicted peptide   gene model=Glyma07g11540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMYRQKLKTRVIKKDVNPEWNEDLTLSVINPNHKVKLTVYDHDTFSKDDKMGDAEFDILPFIEALKMNLTGLANGTVVTRIQPSKHNCLVDESCITYSNGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGI*

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