SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48630 | AT | Annotation by Michelle Graham. TAIR10: receptor for activated C kinase 1B | chr1:17981977-17983268 REVERSE LENGTH=326 | SoyBase | E_val: 6.00E-134 | ISS |
| GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
| GO:0006417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translation | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0048367 | GO-bp | Annotation by Michelle Graham. GO Biological Process: shoot development | SoyBase | N/A | ISS |
| GO:0071215 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0279 | KOG | G protein beta subunit-like protein | JGI | ISS | |
| PTHR19868 | Panther | RECEPTOR FOR ACTIVATED PROTEIN KINASE C (RACK1) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_I1KJ39 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KJ39_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9C4Z6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein subunit beta-like protein B n=1 Tax=Arabidopsis thaliana RepID=GPLPB_ARATH | SoyBase | E_val: 3.00E-131 | ISS |
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Glyma07g11340 not represented in the dataset |
Glyma07g11340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g100800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g11340.1 sequence type=CDS gene model=Glyma07g11340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACAGAGGCAGAGGTTTTCGTCTTCCGAGGAACACTGCGTGGCCACACCGACACTGTCACCGCAATAGCCACCCCAGAGAACAACAACAACAACTCCGACAAAATCATCGTCAGTTCCTCCCGTGACAATTCCTTAATCGTGTGGCGCCTCACTAAGGAATACTCAAACTCTTACGGTGTTCTCCACCGCAGGCTAACCGGTCACTCTCACTTTGTCAGCGATGTCGCTTTATCCTCCGACGCCGATTTCGCCGTCTCCGCCTCCTGGGACGGCGAGCTCCGCCTCTGGGACCTCTCCACCGGCGCCACCAAGCTCCGCTTCATCGGTCACGCCAAGGACGTCCTCTCCGTCGCGCTCTTGAACGACAGTGTTATAATTTCCGGCTCACGTGACCACACCATCAAGGCGTGGAACACGTGCGGCACGTGCATGTCGACGGTGGACAACGGCAGCGGTGACGGTCACACGGATTGGGTTTCATGCGTGCGGTTCATTCCGGACGCGGCGCCACCGAGGTTGGTGTCGGCGTCGTGGGACGGGAGCGTTAGGGTTTGGGACGTGGACGTGGACGTGGACAAGGGCGCGTTGAGGAAGAGGTTTACTCTCTCCGGGCACGAGGGTTACGTGAACGTGGTGGCGGTGTCACCGGACGCGTCGTTGGTTGCGAGTGGGGGAAAGGATGGGGTGGTGCTGCTGTGGGATATGGCGGGTGGGGTGAAGATTTATGAGTTTGAGGTTGGTTCGGTTGTGCATGGGTTGTGGTTTTCTCCAAACAGGTATTGGATGTGTATTGCCACGGATGAGAGTGTTAGGGTTTGGGATTTGGAGAGTAATAGCATTATAAAGGATTTGAATGTCAATGGTAACAACGACCACTACAATTATGTCAATGGTGGGACTGAGATCACTGCCAACAACAAGGATATTTATTGCACGAGTATGAATTGGGATGCTGATGGGAACACGTTGTTCTGTGGTTACACCGACGGTCTAATCAGAATATGGGAAGTCATTAGCTGA
>Glyma07g11340.1 sequence type=predicted peptide gene model=Glyma07g11340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTEAEVFVFRGTLRGHTDTVTAIATPENNNNNSDKIIVSSSRDNSLIVWRLTKEYSNSYGVLHRRLTGHSHFVSDVALSSDADFAVSASWDGELRLWDLSTGATKLRFIGHAKDVLSVALLNDSVIISGSRDHTIKAWNTCGTCMSTVDNGSGDGHTDWVSCVRFIPDAAPPRLVSASWDGSVRVWDVDVDVDKGALRKRFTLSGHEGYVNVVAVSPDASLVASGGKDGVVLLWDMAGGVKIYEFEVGSVVHGLWFSPNRYWMCIATDESVRVWDLESNSIIKDLNVNGNNDHYNYVNGGTEITANNKDIYCTSMNWDADGNTLFCGYTDGLIRIWEVIS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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