SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73690 | AT | Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase D1;1 | chr1:27715113-27717018 FORWARD LENGTH=398 | SoyBase | E_val: 0 | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0659 | KOG | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 | JGI | ISS | |
| PTHR24056 | Panther | CELL DIVISION PROTEIN KINASE | JGI | ISS | |
| PTHR24056:SF93 | Panther | SERINE/THREONINE-PROTEIN KINASE SSN | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_Q947K6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CDK-activating kinase n=1 Tax=Medicago sativa subsp. x varia RepID=Q947K6_MEDSV | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338663 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338663 related cluster n=1 Tax=unknown RepID=UPI0002338663 | SoyBase | E_val: 0 | ISS |
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Glyma07g11280 not represented in the dataset |
Glyma07g11280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g30960 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g100200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g11280.2 sequence type=transcript gene model=Glyma07g11280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAAGTCCTTGGTGAGGGTACATACGGTGTCGTTTACAAAGCCATTGATACCAAGACAGGGCAGACGGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACGGCTCTCAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTCGAAGCTGTTATACGGGACAGGAATATTGTTCTTTCACCTAGTGATATAAAATCTTACCTTCAGATGACATTAAAAGGCCTTGCTATTTGCCACAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCCAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACCAAGCAGTATGGTCCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGAACTCCATCTGCTTCTCAGTGGCCTGATATGATTTTCCTTCCTGATTATGTTGAATATCAACATGTTCCTGCCCCACCTTTGCGTTCTTTATTTCCAATGGCTAGTGACGATGCCTTAGATTTGTTGTCAAGATGTTTACTTATGATCCAAAGGCTAGAATATCTGTACCGCAGGTACTTCTCATCTGCGCCTCTGCCCACAGATCCTGTTAAGCTTTCAAGACCTGCTCCTAAGAAGGAATCTAAGGTTTCAGATGTAATTTCAAACGAAGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCCAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGAAATTCTTTGCAAGGAGATAAGTTTGATGACAGTGTTGTTAGTGTCAGACAGGCAGCTGGTGATAATATGGGAAAGAATGAGCCAGCTCCAATGTCACTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTACAATTACCAGGTAA
>Glyma07g11280.1 sequence type=CDS gene model=Glyma07g11280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAAGTCCTTGGTGAGGGTACATACGGTGTCGTTTACAAAGCCATTGATACCAAGACAGGGCAGACGGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACGGCTCTCAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTCGAAGCTGTTATACGGGACAGGAATATTGTTCTTTCACCTAGTGATATAAAATCTTACCTTCAGATGACATTAAAAGGCCTTGCTATTTGCCACAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCCAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACCAAGCAGTATGGTCCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGAACTCCATCTGCTTCTCAGTGGCCTGATATGATTTTCCTTCCTGATTATGTTGAATATCAACATGTTCCTGCCCCACCTTTGCGTTCTTTATTTCCAATGGCTAGTGACGATGCCTTAGATTTGTTGTCAAGATGTTTACTTATGATCCAAAGGCTAGAATATCTGTACCGCAGGCATTAG >Glyma07g11280.2 sequence type=CDS gene model=Glyma07g11280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAAGTCCTTGGTGAGGGTACATACGGTGTCGTTTACAAAGCCATTGATACCAAGACAGGGCAGACGGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACGGCTCTCAGAGAAATTAAACTGCTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACGGACCTCGAAGCTGTTATACGGGACAGGAATATTGTTCTTTCACCTAGTGATATAAAATCTTACCTTCAGATGACATTAAAAGGCCTTGCTATTTGCCACAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCCAACGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCAGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACCAAGCAGTATGGTCCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTTGCAGCATTTGGAACTCCATCTGCTTCTCAGTGGCCTGATATGATTTTCCTTCCTGATTATGTTGAATATCAACATGTTCCTGCCCCACCTTTGCGTTCTTTATTTCCAATGGCTAGTGACGATGCCTTAGATTTGTTGTCAAGATGTTTACTTATGATCCAAAGGCTAGAATATCTGTACCGCAGGTACTTCTCATCTGCGCCTCTGCCCACAGATCCTGTTAAGCTTTCAAGACCTGCTCCTAAGAAGGAATCTAAGGTTTCAGATGTAATTTCAAACGAAGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCCAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGAAATTCTTTGCAAGGAGATAAGTTTGATGACAGTGTTGTTAGTGTCAGACAGGCAGCTGGTGATAATATGGGAAAGAATGAGCCAGCTCCAATGTCACTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTACAATTACCAGGTAA
>Glyma07g11280.1 sequence type=predicted peptide gene model=Glyma07g11280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPSDIKSYLQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSASQWPDMIFLPDYVEYQHVPAPPLRSLFPMASDDALDLLSRCLLMIQRLEYLYRRH* >Glyma07g11280.2 sequence type=predicted peptide gene model=Glyma07g11280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPSDIKSYLQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSASQWPDMIFLPDYVEYQHVPAPPLRSLFPMASDDALDLLSRCLLMIQRLEYLYRRYFSSAPLPTDPVKLSRPAPKKESKVSDVISNEGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVVSVRQAAGDNMGKNEPAPMSLDFSLFGLKPPNRPTITR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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