Glyma07g10330 - SoyBase

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Report for Sequence Feature Glyma07g10330

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8636027
stop:	8638508
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g10330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02560	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S7e family protein \| chr3:542341-543168 FORWARD LENGTH=191	SoyBase	E_val: 1.00E-110	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042274	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosomal small subunit biogenesis	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0030686	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 90S preribosome	SoyBase	N/A	ISS
GO:0032040	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small-subunit processome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3320	KOG	40S ribosomal protein S7	JGI		ISS
PTHR11278	Panther	40S RIBOSOMAL PROTEIN S7	JGI		ISS
PF01251	PFAM	Ribosomal protein S7e	JGI		ISS
UniRef100_B9T634	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S7, putative n=1 Tax=Ricinus communis RepID=B9T634_RICCO	SoyBase	E_val: 3.00E-126	ISS
UniRef100_I1KIY3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIY3_SOYBN	SoyBase	E_val: 7.00E-135	ISS

Expression Patterns of Glyma07g10330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g10330 not represented in the dataset	Glyma07g10330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g10330

Paralog	Evidence	Comments
Glyma09g31560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g10330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g092900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g10330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g10330

Limit To All Plant Sequences

>Glyma07g10330.4   sequence type=transcript   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGCCGCGAAAACAGAACAGGGACTCACTCTCTTCGCAGCGGCACTCTCGGTGGCTTTCATCTTCTTGGGTTGTCAAGATGTACACATCGAGGAAGAAAATTCACAAGGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAACTCAGCTGTCCAAATTGATGTTTCTGGCAACCGAAAGGCTGTGATTATCCATGTCCCCTACAGACTAAGGAAAGGATTCCGGAAGATTCATGTCAGGCTTGTGAGAGAACTTGAGAAAAAGTTTAGTGGAAAAGATGTAATCTTGATTGCCACCAGGAGGATAGTAAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGCCCCCGCACCAGAACACTCACTGCTGTACATGAGGCAATGCTGGAAGATATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGGTCTTTTTGGACCCCAAGGAGCGAAACAATACCGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCTACTACCGAGGCTTAGGTTCTATTTGTTAGCTTTGAATTTCTTCCTGAATTACATATGGTGGATGCTGGTTTTGTTAAGTTGGCTTTAATTCTGGATTTTCTTTAGTTACTTATAGAAAATACTGTGTCCTGGTTTATCAATGTAGAATTTGATATATTTTCTTGTAACATCCTATGAATCCGTATTTTTAAGATTTTGTCAGTGTTTTGTTCTGGAATGGAAGCGAATCTGTTTAGAAGTTGTATTCTTCACCATCTT

>Glyma07g10330.5   sequence type=transcript   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCAAATTAGGGTTTCACTGCCGCGAAAACAGAACAGGGACTCACTCTCTTCGCAGCGGCACTCTCGGTGGCTTTCATCTTCTTGGGGTGAGTTGTCAAGATGTACACATCGAGGAAGAAAATTCACAAGGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAACTCAGCTGTCCAAATTGATGTTTCTGGCAACCGAAAGGCTGTGATTATCCATGTCCCCTACAGACTAAGGAAAGGATTCCGGAAGATTCATGTCAGGCTTGTGAGAGAACTTGAGAAAAAGTTTAGTGGAAAAGTATGAAGAGTCATGTCCCTTTGTTTTCAATATTCTTTCACCAGACTGTTTCTGCACATTCCTGTCAGCTACTTCTCTGAAACACTATTCTACTCCTTGTTGGGGATGCTTGTTGAACTTTTTATTCTTTTCAATCACTGTATTTTACTCCTTATTTAGCTAGTTGTTTGGCACAAGAACATTAGCCATAAAAATTGTCTCTCTTTTCCAGTCACCTACAATTTTTATTTT

>Glyma07g10330.6   sequence type=transcript   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATGTGATGCTTTATTTTGTTATATATTAATGACCCTTAAACTTGTAGGATGTAATCTTGATTGCCACCAGGAGGATAGTAAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGCCCCCGCACCAGAACACTCACTGCTGTACATGAGGCAATGCTGGAAGATATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGGTCTTTTTGGACCCCAAGGAGCGAAACAATACCGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCTACTACCGAGGCTTAGGTTCTATTTGTTAGCTTTGAATTTCTTCCTGAATTACATATGGTGGATGCTGGTTTTGTTAAGTTGGCTTTAATTCTGGATTTTCTTTAGTTACTTATAGAAAATACTGTGTCCTGGTTTATCAATGTAGAATTTGATATATTTTCTTGTAACATCCTATGAATCCGTATTTTTAAGATTTTGTCAGTGTTTTGTTCTGGAATGGAAGCGAATCTG

Coding sequences of Glyma07g10330

Limit To All Plant Sequences

>Glyma07g10330.3   sequence type=CDS   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCGAGGAAGAAAATTCACAAGGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAACTCAGCTGTCCAAATTGATGTTTCTGGCAACCGAAAGGCTGTGATTATCCATGTCCCCTACAGACTAAGGAAAGGATTCCGGAAGATTCATGTCAGGCTTGTGAGAGAACTTGAGAAAAAGTTTAGTGGAAAAGATGTAATCTTGATTGCCACCAGGAGGATAGTAAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGCCCCCGCACCAGAACACTCACTGCTGTACATGAGGCAATGCTGGAAGATATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGGTCTTTTTGGACCCCAAGGAGCGAAACAATACCGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCTACTACCGAGGCTTAG

>Glyma07g10330.4   sequence type=CDS   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCGAGGAAGAAAATTCACAAGGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAACTCAGCTGTCCAAATTGATGTTTCTGGCAACCGAAAGGCTGTGATTATCCATGTCCCCTACAGACTAAGGAAAGGATTCCGGAAGATTCATGTCAGGCTTGTGAGAGAACTTGAGAAAAAGTTTAGTGGAAAAGATGTAATCTTGATTGCCACCAGGAGGATAGTAAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGCCCCCGCACCAGAACACTCACTGCTGTACATGAGGCAATGCTGGAAGATATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGGTCTTTTTGGACCCCAAGGAGCGAAACAATACCGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCTACTACCGAGGCTTAG

>Glyma07g10330.5   sequence type=CDS   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACATCGAGGAAGAAAATTCACAAGGATAAGGATGCTGAGCCAACTGAATTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAATACCAACAATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAACTCAGCTGTCCAAATTGATGTTTCTGGCAACCGAAAGGCTGTGATTATCCATGTCCCCTACAGACTAAGGAAAGGATTCCGGAAGATTCATGTCAGGCTTGTGAGAGAACTTGAGAAAAAGTTTAGTGGAAAAGTATGA

>Glyma07g10330.6   sequence type=CDS   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAAGATATTGTATTGCCTGCTGAGATTGTTGGAAAGCGTGTTAGGTATAAAATTGATGGTTCCAAGATTATGAAGGTCTTTTTGGACCCCAAGGAGCGAAACAATACCGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAACTTTCAGGCAAAGATGTCGTGTTTGAGTATCCTACTACCGAGGCTTAG

Predicted protein sequences of Glyma07g10330

Limit To All Plant Sequences

>Glyma07g10330.3   sequence type=predicted peptide   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKAVIIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPTTEA*

>Glyma07g10330.4   sequence type=predicted peptide   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKAVIIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPTTEA*

>Glyma07g10330.5   sequence type=predicted peptide   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNNELKSDLKDLYINSAVQIDVSGNRKAVIIHVPYRLRKGFRKIHVRLVRELEKKFSGKV*

>Glyma07g10330.6   sequence type=predicted peptide   gene model=Glyma07g10330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLETFAAVYRKLSGKDVVFEYPTTEA*

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