Report for Sequence Feature Glyma07g10290
Feature Type: gene_model
Chromosome: Gm07
Start: 8591752
stop: 8592495
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g10290
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18360 AT
Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr3:6300827-6301684 REVERSE LENGTH=285
SoyBase E_val: 9.00E-25 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF05678 PFAM
VQ motif
JGI ISS
UniRef100_G7ID96 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein MKS1 n=1 Tax=Medicago truncatula RepID=G7ID96_MEDTR
SoyBase E_val: 4.00E-12 ISS
UniRef100_I1KIX9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KIX9_SOYBN
SoyBase E_val: 5.00E-135 ISS
Proteins Associated with Glyma07g10290
Locus Gene Symbol Protein Name
VQ28 VQ motif containing protein gene 28
Expression Patterns of Glyma07g10290
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g10290
Paralog Evidence Comments
Glyma09g31600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g10290 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g092500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g10290
Coding sequences of Glyma07g10290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g10290.2 sequence type=CDS gene model=Glyma07g10290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTCCCTCACAATTCCATGCAAAGAAACAAACTACCTCCACCACCAATAACAACAACATTAATGGGTTGCTATCACCATCTTTGAGAATCAACAAGGAATCACATTTAATAAAAAAATCATCATCTACATCACCATCATCGTCATCAACATCATCATCATCCCTTGTTAATAGTGCCATGACACAGGCAATGCCAATGTCATTATACAAACAAACGCCACCACAACAACAACAATGCCACCCGGTAATTATCTACACACATTCTCCAAAGGTCATTCATACTCAGCCTAAAGATTTCATGTCATTGGTGCAAAAGCTCACCGGCCTCTCTCGCTCAGATGAAAAGGAGGATGAGGACGGTGGCAACCCAACGCCGCAACAACCCTCAAACCAGAAATTTGGGGGTGACGTTGCGGTGGCCGTGGGAGACAAAGAAAGTGGTCGAAAAAATGAGGACAACGAGACATCATCGGTCATAACAACCGAAGAAAATTATTGTAGTAGCGTGGGAGAAAACCAAGTTAACTCTTGTTTCATGATGGGGGAGCCATCAATGCTAGAGCCTAGGTTGAACCCTTACGTGACAAATTTGCCGGTGTTGGCACCGAGCTCGGCGGAGTTTGCGTGTTCGAGTCAGCCATTCTTGAATTACACGGATTCTTTGTTTTTCTCTCATAACATGAGGAACTCTATTCCATCATCTGTGACATTGGAAGGGATGAAAGAGTTCCGTGAGCATTGA
Predicted protein sequences of Glyma07g10290
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g10290.2 sequence type=predicted peptide gene model=Glyma07g10290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSPSQFHAKKQTTSTTNNNNINGLLSPSLRINKESHLIKKSSSTSPSSSSTSSSSLVNSAMTQAMPMSLYKQTPPQQQQCHPVIIYTHSPKVIHTQPKDFMSLVQKLTGLSRSDEKEDEDGGNPTPQQPSNQKFGGDVAVAVGDKESGRKNEDNETSSVITTEENYCSSVGENQVNSCFMMGEPSMLEPRLNPYVTNLPVLAPSSAEFACSSQPFLNYTDSLFFSHNMRNSIPSSVTLEGMKEFREH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
