Report for Sequence Feature Glyma07g10280
Feature Type: gene_model
Chromosome: Gm07
Start: 8576972
stop: 8584750
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g10280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18370 AT
Annotation by Michelle Graham. TAIR10: C2 domain-containing protein | chr3:6306362-6310256 FORWARD LENGTH=815
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG1030
KOG
Predicted Ca2+-dependent phospholipid-binding protein
JGI ISS
PTHR10024 Panther
SYNAPTOTAGMIN
JGI ISS
PTHR10024:SF126 Panther
C2 DOMAIN-CONTAINING PROTEIN
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
UniRef100_G7KN36 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Plant synaptotagmin n=1 Tax=Medicago truncatula RepID=G7KN36_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KIX8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIX8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g10280
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g10280
Paralog Evidence Comments
Glyma09g31610 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g10280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g092400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g10280
Coding sequences of Glyma07g10280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g10280.1 sequence type=CDS gene model=Glyma07g10280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCTTGAAGAAAAGGGCACTTTCCATTAACATTGAAGAGGCTGCTGTGGACTTCTTCAACCACCTCTTGCAGGAGAAGCCTAGGATTCCAGTCTTTATTCCTTTGATTCTGATTGCTTGGGCAATTGAGAGATGGGTCTTCTCTGCCTCCACTTGGGTTCCTCTTGCACTTGCTGTGTGGACTACTATACAGTACGGTAGATACCAACGCAAACTGCTTGTGGAGGATTTGGATAAGAAATGGAAGCGAATCATACTGAACGTTTCGCCCATCACACCATTGGAGCACTGTGAGTGGCTGAATAAGTTGTTGACAGAAGTCTGGTCCAACTATTTTAATCCCAAGTTTTCAATAAGGATATCTGCTATAGTTGAGAAACGTTTAAAGCTCCGGAAACCAAGGCTCCTAGAAAGAGTTGAACTGCAGGAGTTTTCGCTAGGATCATGCCCCCCTAGCTTGGCTCTGCAAGGGATGCGGTGGTCAACTATTGGTGATCAGAGATTTCTGCAACTGGGTTTTGATTGGGATACAAATGAAATGAGCATTTTGTTGCTTGCTAAGCTTGCAAAGCCATTGATTGGAACTGCTCGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGCCTCACCAATTCTAGATGGAAAAGCACTCCTGTATTCTTTTGTATCAACTCCTGAGGTGAGAATAGGAGTTGCCTTTGGAAGCGGTGGAAGCCAATCACTTCCTGCCACTGAATGGCCTGGTGTTTCTTCTTGGCTGGAAAAACTTTTTACTGACACCTTGGCTAAAACCATGGTAGAACCTCGGCGTCGTTGTTTCACTTTGCCAGCTGTTGATTTAAGGAAAAAAGCAGTTGGAGGCATTATATATATTAGAGTGATTTCAGCAAATAAACTTTCTAGGAGTTGCTTTAAGACATCTAGGAGGCAACCAAATGGTACATCCAATGGTTGTTCAGAGGATAATTTTGATGATAAGGATCTACAAACATTTGTAGAGGTAGAAATTGAGGAATTAACAAGGAGAACAGATGTCAGACTGGGTTCAACCCCCAGATGGGATGCACCATTTAATATGGTTTTACACGATAATGCAGGAACTCTACGTTTCAATCTTCACGAGAGTAGTCCCAACAACGTGAGATGTGACTACCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATTATGTGGGCAATAGGACCTGATTCTGGAGTCATAGCAAAGCAAGCACAGTTTTGCGGAGAAGAAATTGAAATGGTTGTCCCATTTGAGGGGTCCAACTCAGGAGAGTTGAAGGTGAGCATTGTAGTAAAAGAGTGGCAATATTCTGATGGTTCACATAGTTTGAATAGTCTCCGGAGTAGCAGCTCTCAGCAGTCAATTAATGGATCACCAAATTTTCAGTTAAGAACTGGAAGGAAAATTAATGTAACTGTTGTGGAAGGAAAGGATCTTGCTGCAAAAGACAAATCTGGAAAATTTGACCCTTACATCAAATTGCAGTATGGAAAGGTTGTCCAGAAAACAAGGACTGTTCATACTCCAAATCCTGCCTGGAATCAGACGTTTGAATTCGATGAGATTGGTGGTGGGGAATACTTAAAAATAAAAGGTTTTTCTGAAGAAATTTTCGGAGATGAAAACATTGGTAGTGCACATGTGAATTTGGAAGGACTGGTTGAGGGCTCAGTCAGGGACGTATGGATCCCTCTTGAAAGAGTGCGTTCAGGAGAATTAAGACTTCAAATATCAATTAGAGCGGATGATCAAGAAGGATCGAGGGGTTCAGGTTTGGGCTTAGGAAATGGTTGGATTGAACTTGTTCTGATAGAGGGAAGGGGTCTAGTTGCTGCCGATGTCAGAGGCACAAGTGATCCATTTGTGAGGGTACACTACGGAAATTTTAAGAAAAAGACAAAGGTCATATACAAAACTCTTAACCCTCAGTGGAACCAGACCTTAGAGTTCCCTGATGATGGAAGTCAACTAATGCTTTATGTCAAGGACCACAATGCATTACTACCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCTCCCAACCAGACCGCTGACAAGTGGATACCTCTCCAAGGGGTGAAAAGGGGTGAAATTCACATCCAAATTACTAGAAAAGTTCCAGAGATGCAGAAGAGGCAAAGTCTAGACTCTGAACCTTCCTTGAGTAAACTACACCAAATTCCTAACCAGATAAAACAGATGATGATCAAGTTCAGGTCCTTCATAGAGGATGGAAATCTTGAAGGACTCTCTGCAACATTGAGTGAGCTAGAAACTCTAGAGGATACACAAGAAGGGTATATAGTTCAGCTGGAGACTGAGCAAATGCTTCTTCTCAGCAAAATAAAGGAACTTGGCCAAGAGATCATTAATTCTTCTCCTTCCCTGAGCAGGAGATCTTATTCAATTGGAAACTGA
Predicted protein sequences of Glyma07g10280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g10280.1 sequence type=predicted peptide gene model=Glyma07g10280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLKKRALSINIEEAAVDFFNHLLQEKPRIPVFIPLILIAWAIERWVFSASTWVPLALAVWTTIQYGRYQRKLLVEDLDKKWKRIILNVSPITPLEHCEWLNKLLTEVWSNYFNPKFSIRISAIVEKRLKLRKPRLLERVELQEFSLGSCPPSLALQGMRWSTIGDQRFLQLGFDWDTNEMSILLLAKLAKPLIGTARIVINSLHIKGDLLASPILDGKALLYSFVSTPEVRIGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLAKTMVEPRRRCFTLPAVDLRKKAVGGIIYIRVISANKLSRSCFKTSRRQPNGTSNGCSEDNFDDKDLQTFVEVEIEELTRRTDVRLGSTPRWDAPFNMVLHDNAGTLRFNLHESSPNNVRCDYLASCEIKLRHVEDDSTIMWAIGPDSGVIAKQAQFCGEEIEMVVPFEGSNSGELKVSIVVKEWQYSDGSHSLNSLRSSSSQQSINGSPNFQLRTGRKINVTVVEGKDLAAKDKSGKFDPYIKLQYGKVVQKTRTVHTPNPAWNQTFEFDEIGGGEYLKIKGFSEEIFGDENIGSAHVNLEGLVEGSVRDVWIPLERVRSGELRLQISIRADDQEGSRGSGLGLGNGWIELVLIEGRGLVAADVRGTSDPFVRVHYGNFKKKTKVIYKTLNPQWNQTLEFPDDGSQLMLYVKDHNALLPTSSIGECVVEYQRLPPNQTADKWIPLQGVKRGEIHIQITRKVPEMQKRQSLDSEPSLSKLHQIPNQIKQMMIKFRSFIEDGNLEGLSATLSELETLEDTQEGYIVQLETEQMLLLSKIKELGQEIINSSPSLSRRSYSIGN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
