Glyma07g10170 - SoyBase

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Report for Sequence Feature Glyma07g10170

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8506583
stop:	8508956
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g10170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18410	AT	Annotation by Michelle Graham. TAIR10: Complex I subunit NDUFS6 \| chr3:6323203-6323761 FORWARD LENGTH=106	SoyBase	E_val: 3.00E-55	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005747	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I	SoyBase	N/A	ISS
GO:0031966	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane	SoyBase	N/A	ISS
GO:0045271	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: respiratory chain complex I	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4009	KOG	NADH-ubiquinone oxidoreductase, subunit NDUFB10/PDSW	JGI		ISS
PF10249	PFAM	NADH-ubiquinone oxidoreductase subunit 10	JGI		ISS
UniRef100_B9T595	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9T595_RICCO	SoyBase	E_val: 3.00E-57	ISS
UniRef100_I1KIW8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIW8_SOYBN	SoyBase	E_val: 6.00E-107	ISS

Expression Patterns of Glyma07g10170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g10170 not represented in the dataset	Glyma07g10170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g10170

Paralog	Evidence	Comments
Glyma13g33410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g10170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g091500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g10170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g10170

Limit To All Plant Sequences

>Glyma07g10170.4   sequence type=transcript   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAATAAATAAATAAAAGCATTTATTGTGAAAAATATAAAAAAAATACAAAAAAAATCATGACTAATATAATTTTATGTCTCTCGATAAGAATTATTTTTTTAGTTAGTTAACCCATATGTTAAGGAAAAGTGTTAATACTTGTGAAATGGAGAGAAGTTTGCTCTTGAGCCCAAATATAAGGAACAGTTTATTGGGCCCACGGTAATGGGTCTGTGACAACCGTGAGCCCATAAGGGAAGAAAGTGAAAAAAAAAAAAAAGCGAACTGCAGAAACGCAATCAGAGGAAGAGAAGAGACACTGAGGTCGTTGGCGAGAATGGGAAGAAAGAAGGGGTATGTTGAGTTCGAGGAGTCGCCGCCGGACGATTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTGAGAGAGAAGTGGATCCAAATCGAGAAGGCCAAGATCATTAGGGAGAAGCTCCGCTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCAACCAGTATCTCGAGTCCACCCGCGGCATCGGTTGGGGCAAGGACGGTCGCCACCCATCTCTCCACGCTCCCAAGGTTGACCCTGTTGAGTCTGAATGACCTTCCTGTGGACAATAATAACAAAAAAAAGGGAAGACCGTTTATCCAACTAATCATATTGCTGAATCGGATATTGGGTTGGAGAAGTGTTTGTTGCAGTTATTGTGTTCATGTTCTTTTTTTTAGTTGAACTTCCTGCAAACTACAACTGTATTTTGACTTAGCCTTGGCTATTTTTCCTTGGCTCATTAGTCTTATGTTGTTTGTTACCATTTAAATGTAAACAAGAAAGGAAAGGCTATGAACAAAGTACATCACAATCAGATTATGAAATAAGTTTATTCGTTCCCTGTTGATTGTAATGTTATCCATTCCGAATATTCAAAGTAAGACTCTTTGAAACTCAAATACCATACATCGATATGTAATCATGAAATTTCACCATCATGTTGGATTTGAGGGTGCCAAGCATTTTCTTCACCCGAGCCCGGGACTTGTTGAAAGGGAGAAATGTCAAAATGCTGTGTGTCAATAAGTTTCATGTCCAAGAGAAGATATATTTAGTGCATGTTTAGTTGGACGCCGGACAATTTTGATTTTAAATATATTTTTACATGTTTGGTTTCATGTTGAAGAAGAATTCAGAATTATTTATGGGTTGAAGAAGAATTCAGAA

>Glyma07g10170.5   sequence type=transcript   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAATCAGAGGAAGAGAAGAGACACTGAGGTCGTTGGCGAGAATGGGAAGAAAGAAGGGGTATGTTGAGTTCGAGGAGTCGCCGCCGGACGATTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTGAGAGAGAAGTGGATCCAAATCGAGAAGGCCAAGATCATTAGGGAGAAGCTCCGCTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCAACCAGTATCTCGAGTCCACCCGCGGCATCGGTTGGGGCAAGGACGGTCGCCACCCATCTCTCCACGCTCCCAAGGTTGACCCTGTTGAGTCTGAATGACCTTCCTGTGGACAATAATAACAAAAAAAAGACCGTTTATCCAACTAATCATATTGCTGAATCGGATATTGGGTTGGAGAAGTGTTTGTTGCAGTTATTGTGTTCATGTTCTTTTTTTTAGTTGAACTTCCTGCAAACTACAACTGTATTTTGACTTAGCCTTGGCTATTTTTCCTTGGCTCATTAGTCTTATGTTGTTTGTTACCATTTAAATGTAAACAAGAAAGGAAAGGCTATGAACAAAGTACATCACAATCAGATTATGAAATAAGTTTATTCGTTCCCTGTTGATTGTAATGTTATCCATTCCGAATATTCAAAGTAAGACTCTTTGAAACTCAAATACCATACATCGATATGTAATCATGAAATTTCACCATCATGTTGGATTTGAGGGTGCCAAGCATTTTCTTCACCCGAGCCCGGGACTTGTTGAAAGGGAGAAATGTCAAAATGCT

Coding sequences of Glyma07g10170

Limit To All Plant Sequences

>Glyma07g10170.1   sequence type=CDS   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAAAGAAGGGGTATGTTGAGTTCGAGGAGTCGCCGCCGGACGATTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTGAGAGAGAAGTGGATCCAAATCGAGAAGGCCAAGATCATTAGGGAGAAGCTCCGCTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCAACCAGTATCTCGAGTCCACCCGCGGCATCGGTTGGGGCAAGGACGGTCGCCACCCATCTCTCCACGGTCACCCTTCTCTCTTCCAATTTCAATCTACTAGGGTTTTAGGAATTCTCAATTTGGAAAATTATGAAACATTTGATGATTTCCTTAATGCTGTTTGGAATTTATATTCTTCCTTGTCTGTTGATGGTTTTGTGATGATTCATTGTTTAATTTTCTGA

>Glyma07g10170.4   sequence type=CDS   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAAAGAAGGGGTATGTTGAGTTCGAGGAGTCGCCGCCGGACGATTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTGAGAGAGAAGTGGATCCAAATCGAGAAGGCCAAGATCATTAGGGAGAAGCTCCGCTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCAACCAGTATCTCGAGTCCACCCGCGGCATCGGTTGGGGCAAGGACGGTCGCCACCCATCTCTCCACGCTCCCAAGGTTGACCCTGTTGAGTCTGAATGA

>Glyma07g10170.5   sequence type=CDS   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAAAGAAGGGGTATGTTGAGTTCGAGGAGTCGCCGCCGGACGATTTCGATCCGGCGAATCCGTACAAGGACCCGGTGGCGATGCTGGAGATGAGGGAGCACATCGTGAGAGAGAAGTGGATCCAAATCGAGAAGGCCAAGATCATTAGGGAGAAGCTCCGCTGGTGCTACCGCATCGAAGGCGTCAACCACCTCCAGAAGTGCCGCCACCTCGTCAACCAGTATCTCGAGTCCACCCGCGGCATCGGTTGGGGCAAGGACGGTCGCCACCCATCTCTCCACGCTCCCAAGGTTGACCCTGTTGAGTCTGAATGA

Predicted protein sequences of Glyma07g10170

Limit To All Plant Sequences

>Glyma07g10170.1   sequence type=predicted peptide   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKKGYVEFEESPPDDFDPANPYKDPVAMLEMREHIVREKWIQIEKAKIIREKLRWCYRIEGVNHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHGHPSLFQFQSTRVLGILNLENYETFDDFLNAVWNLYSSLSVDGFVMIHCLIF*

>Glyma07g10170.4   sequence type=predicted peptide   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKKGYVEFEESPPDDFDPANPYKDPVAMLEMREHIVREKWIQIEKAKIIREKLRWCYRIEGVNHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVDPVESE*

>Glyma07g10170.5   sequence type=predicted peptide   gene model=Glyma07g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKKGYVEFEESPPDDFDPANPYKDPVAMLEMREHIVREKWIQIEKAKIIREKLRWCYRIEGVNHLQKCRHLVNQYLESTRGIGWGKDGRHPSLHAPKVDPVESE*

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