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Report for Sequence Feature Glyma07g10133

Feature Type:gene_model
Chromosome:Gm07
Start:8488675
stop:8494796
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g10133
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73875AT Annotation by Michelle Graham. TAIR10: DNAse I-like superfamily protein | chr1:27781112-27784571 FORWARD LENGTH=454 SoyBaseE_val: 4.00E-51ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR12121Panther CARBON CATABOLITE REPRESSOR PROTEIN 4 JGI ISS
PTHR12121:SF9Panther CARBON CATABOLITE REPRESSOR PROTEIN 4-RELATED JGI ISS
UniRef100_D7KRN3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KRN3_ARALL SoyBaseE_val: 4.00E-50ISS
UniRef100_I1KIW5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KIW5_SOYBN SoyBaseE_val: 7.00E-83ISS

Expression Patterns of Glyma07g10133
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g10133 not represented in the dataset
Glyma07g10133 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g10133
ParalogEvidenceComments
Glyma13g33431 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g10133 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma07g10133
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g10133
>Glyma07g10133.1   sequence type=CDS   gene model=Glyma07g10133   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTTTCGAGACAATTGTACAGATGGAGTGTGGAAGAACTAAGACTTGCGTCTGGGGAAGAAGGGGTCACTCGTCTTCAGCACCAGCTCAAACTCTGCAGTGCTTATAGTGGTGTTCCTGGAAACCATAGAACGAGAGATGATATTGGGGAACCCTTGGCAACATCATACCACTCCAAGTTCATGGGAACTGTTGATTATATCTGGCATTCTGAGGATCTTATTCCTGTTAGAGTTCTTGAAACCTTGCCCATTGATACTCTTAGAAGATCTAGAGGACTCCCTAGTGAGAAATGGGGAAGTGACCACTTAGCTGTTGTATGTGAAGTTGCTTTTGCAAACAACGGCAATGTATCCTGA
Predicted protein sequences of Glyma07g10133
>Glyma07g10133.1   sequence type=predicted peptide   gene model=Glyma07g10133   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSRQLYRWSVEELRLASGEEGVTRLQHQLKLCSAYSGVPGNHRTRDDIGEPLATSYHSKFMGTVDYIWHSEDLIPVRVLETLPIDTLRRSRGLPSEKWGSDHLAVVCEVAFANNGNVS*






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