SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51740 | AT | Annotation by Michelle Graham. TAIR10: syntaxin of plants 81 | chr1:19189063-19191188 FORWARD LENGTH=310 | SoyBase | E_val: 4.00E-144 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| KOG3894 | KOG | SNARE protein Syntaxin 18/UFE1 | JGI | ISS | |
| PTHR15959 | Panther | SYNTAXIN-18 | JGI | ISS | |
| PF10496 | PFAM | SNARE-complex protein Syntaxin-18 N-terminus | JGI | ISS | |
| UniRef100_B9SAI5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-81, putative n=1 Tax=Ricinus communis RepID=B9SAI5_RICCO | SoyBase | E_val: 1.00E-159 | ISS |
| UniRef100_C6TGA0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGA0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g10100 not represented in the dataset |
Glyma07g10100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g33450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g10100.1 sequence type=CDS gene model=Glyma07g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAAAGCAAGGGACAGGACCGAAGATTTCAAAGACGCCGTGCGCCACACCGCTCGCTCTTTGGGCTACGATGAGGCTAAATTGGCGTCCGTTATGGCTTCTTTCATTATTCATAAACCGCCGCAAAAGTCCCCGTTTTCCAAAGCTGCATTGAAGACGTTGGAGAGTATTGGAGAGCTGGATCAGTTTTTGTTGAAGCACAGAAAGGACTACACGGATCTGCATCGCACAACTGAAAAGGAGAGAGATAGCATTGAGCATGAAGTTAGTACTTTTATTAAAACTTGCCAGGAACAAATTGATATTCTTAAGAATAGTATAAATCAAGAGGAGGAAACTTCGAAAGGTTGGCTTGGCATTGCAACCACAAAATCTAATGCCGACATCATTGCCCACAAACATGGGGTGGTTCTAATTTTAAGTGAGAGGCTCCATTCAGTTACGGCACAGTTTGATCAGCTCAGAGCTGTACGCTTCCAGGATGCTATTAACAAAGCAATACCACGAAGAAAACTTAACCGTGTAGCCAGGAATGATTCTGCAGAAACCTCTAAGTCAAGTGACATGGAGCTCAGAGAACCAGAGGAGTTACGCGCTGAGCCTCTAAGAGTCCAACAGCAACTCTTGGATGATGAAACACGTGCCCTTCAGGTGGAATTGACTAGTCTTCTCGATACAGTTCAAGAAACTGAAACTAAGATGGTGGAGATGTCTGCACTAAATCACCTCATGTCTACACATGTTTTGCATCAAGCTCAGCAAATTGAGCATCTGTATGATCAGGCTGTTGAAGCTACTAACAATGTTGAGCTTGGTAACAAAGAACTCTCACAAGCCATTCAGCGGAATAGCAGCAGCAGGACATTTCTTTTACTATTTCTATTTGTGCTTACTTTTTCAATTCTCTTTCTTGATTGGTATAGTTAA
>Glyma07g10100.1 sequence type=predicted peptide gene model=Glyma07g10100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGKARDRTEDFKDAVRHTARSLGYDEAKLASVMASFIIHKPPQKSPFSKAALKTLESIGELDQFLLKHRKDYTDLHRTTEKERDSIEHEVSTFIKTCQEQIDILKNSINQEEETSKGWLGIATTKSNADIIAHKHGVVLILSERLHSVTAQFDQLRAVRFQDAINKAIPRRKLNRVARNDSAETSKSSDMELREPEELRAEPLRVQQQLLDDETRALQVELTSLLDTVQETETKMVEMSALNHLMSTHVLHQAQQIEHLYDQAVEATNNVELGNKELSQAIQRNSSSRTFLLLFLFVLTFSILFLDWYS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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