Glyma07g10010 - SoyBase

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Report for Sequence Feature Glyma07g10010

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8408514
stop:	8414523
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g10010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18440	AT	Annotation by Michelle Graham. TAIR10: aluminum-activated malate transporter 9 \| chr3:6328181-6330652 FORWARD LENGTH=598	SoyBase	E_val: 0	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0015743	GO-bp	Annotation by Michelle Graham. GO Biological Process: malate transport	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0005253	GO-mf	Annotation by Michelle Graham. GO Molecular Function: anion channel activity	SoyBase	N/A	ISS
KOG4711	KOG	Predicted membrane protein	JGI		ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_G7L918	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum activated malate transporter n=1 Tax=Medicago truncatula RepID=G7L918_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338F28	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338F28 related cluster n=1 Tax=unknown RepID=UPI0002338F28	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g10010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g10010

Paralog	Evidence	Comments
Glyma09g31750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g10010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g090300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g10010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g10010

Limit To All Plant Sequences

>Glyma07g10010.1   sequence type=CDS   gene model=Glyma07g10010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGGTTCAACGGGGAGGGTGGCGAAGCTGGGTTCCTTCCGCCACAGCTTCGCGGAGAAGAAGGAGAGGCTGCTCTCCATGAAGGGCGGCGGTTACTCCCAAATAGGGATAGGGATTGCGCTGCCGGAGTCCGACGAGGAGGACCAGTCGCCGACGCGGAGGAGCTGCTGCTCCTACCGCGCCGTCTCGGACGGGATCGTCGGCGCGTGGAAGACCGCGAAGCACGTGGTGGCGAGGGCGTGGGAAATGGGTCGCTCCGATCCCAGAAAGATCATATTCTCCGCCAAAATGGGACTCGCTCTCATTCTTCTTTCGCTTTTGATATTTCTGAAACAGCCCTTTGAGGACATTAGTAAACACTCCGTTTGGGCCATTCTCACTGTCGTTGTCGTCTTCGAATTCAGCATAGGGGCAACTCTTAGCAAAGGGCTTAACAGAGGATTGGGGACTTTGTTAGCTGGGGGACTAGCTTTGGGAATGGGACTTTTATCAAAATTGGCTGGAAAATGGGAAGAAACCATTATAGTTATTAGCATTTTCACTGCAGGATTTTGTGTCACATATGCAAAACAATATCCAACAATGAAGGCTTATGAATATGGTTTCCGTGTGTTCTTGATCACCTATTGCTTCATTATTGTATCAGGGTATCGTTCAGGAGAGTTTGTTGAAACAGCTGTAGATAGATTTTTGCTCATTGCACTGGGTGCTGCTGTGGCTCTGGGGGTAAATGTATGTATATATCCAATCTGGGCTGGTGAGGATCTACACAAGCTTGTGGCAAAAAATTTCGTGGGCGTTGCAGCATCATTGGAAGGTGTTGTAAATAACTATCTTAATTGCATTGAATATGAGAGAGTGCCTTCAAAAATTCTCACGTACCAAGCTTCTGAGGATGTGGTTTACAAAGGCTACAGATCAGCTGTTGAATCTACAAGCACAGAGGATTCATTGATGGGTTTTGCTGTCTGGGAGCCACCTCATGGTCGATACAAAATGCTTAGATATCCATGGCAAAATTATGTGAAAGTAAGTGGAGCACTAAGGCATTGTGCGTTTATGGTCATGGCTATGCATGGATGTATACTTTCTGAAATACAGGCTCCACCTGAGAAGAGGCAAGTGTTTAGTAGGGAGGTTCAAAAGCTAGGTTCTGAAGCAGCCAAAATTCTACGAGAACTTGGGAACAAAGTAAAAAAGATGGAGAAACTAGGCGAGGAAGACATTCTTTATGAAGTTCACGAGGCAGCAGAAGAATTGCAACAGAAGATTGACAAAAAATCCTTCCTCCTTGTAAATTCAGAGAGCTGGGAAATTGGAAACCGTCCAAGAGGGGAGGGTGATCCTCAAGACCTCTTGAACATGAATGAAGAAAGACACTTTTTGGAGTACAAGTCTCTCAGTGAAGCTGTGCTTGACCTCAGAACTGCCAAAGTTCCAAGAAGTTGGGGAGAACTAGCAACTCCTGACAACAAACCTGCAGCACCTATAGGTGTTGGTGATGAAAACTTGTTCAAGAAACAGATATCTTGGCCTGCTCATATTTCATTTAAAGCAGATGCAGGGACAAGAGAGGAAGAATCTAAAACCTATGAAAGTGCTAGTTCATTGTCTCTAGCAACATTTACATCCCTTCTTATTGAGTTTGTGGCTAGGCTCCAGAACCTTGTGGATTCTTTTGAAGAGTTAGGTGAGAAAGCAAAATTTAAGGACCCTCTTGAGCAAGCACCACCAACATCTGGTGGGTTTTGGAACAGGTTGTGTAATTGTTTGACATTCAAGGACTGA

Predicted protein sequences of Glyma07g10010

Limit To All Plant Sequences

>Glyma07g10010.1   sequence type=predicted peptide   gene model=Glyma07g10010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMGSTGRVAKLGSFRHSFAEKKERLLSMKGGGYSQIGIGIALPESDEEDQSPTRRSCCSYRAVSDGIVGAWKTAKHVVARAWEMGRSDPRKIIFSAKMGLALILLSLLIFLKQPFEDISKHSVWAILTVVVVFEFSIGATLSKGLNRGLGTLLAGGLALGMGLLSKLAGKWEETIIVISIFTAGFCVTYAKQYPTMKAYEYGFRVFLITYCFIIVSGYRSGEFVETAVDRFLLIALGAAVALGVNVCIYPIWAGEDLHKLVAKNFVGVAASLEGVVNNYLNCIEYERVPSKILTYQASEDVVYKGYRSAVESTSTEDSLMGFAVWEPPHGRYKMLRYPWQNYVKVSGALRHCAFMVMAMHGCILSEIQAPPEKRQVFSREVQKLGSEAAKILRELGNKVKKMEKLGEEDILYEVHEAAEELQQKIDKKSFLLVNSESWEIGNRPRGEGDPQDLLNMNEERHFLEYKSLSEAVLDLRTAKVPRSWGELATPDNKPAAPIGVGDENLFKKQISWPAHISFKADAGTREEESKTYESASSLSLATFTSLLIEFVARLQNLVDSFEELGEKAKFKDPLEQAPPTSGGFWNRLCNCLTFKD*

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