Report for Sequence Feature Glyma07g09980
Feature Type: gene_model
Chromosome: Gm07
Start: 8388203
stop: 8392683
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g09980
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49050 AT
Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr1:18150638-18153186 FORWARD LENGTH=583
SoyBase E_val: 0 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0004190 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity
SoyBase N/A ISS
KOG1339
KOG
Aspartyl protease
JGI ISS
PTHR13683 Panther
ASPARTYL PROTEASES
JGI ISS
PTHR13683:SF98 Panther
CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED
JGI ISS
PF00026 PFAM
Eukaryotic aspartyl protease
JGI ISS
UniRef100_D7KDZ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aspartyl protease family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDZ8_ARALL
SoyBase E_val: 0 ISS
UniRef100_UPI0002338F27 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002338F27 related cluster n=1 Tax=unknown RepID=UPI0002338F27
SoyBase E_val: 0 ISS
Proteins Associated with Glyma07g09980
Locus Gene Symbol Protein Name
LDL1-1 LSD1-like1 gene 1
Expression Patterns of Glyma07g09980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g09980
Paralog Evidence Comments
Glyma09g31780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g09980 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g090000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g09980
Coding sequences of Glyma07g09980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g09980.1 sequence type=CDS gene model=Glyma07g09980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGATGATCAATCTACTCAGATCAAAGGTGTTGTTATAATCTCCCTTCCACCACCAGATAACCCTTCTTTGGGCAAAACCATCACTGCTTTTGCTTTCTCTAATAACCCTTCTCCTCCCCCTCAACTTTTTATTCAACCCCATCAACACCAAAGTCAACAAACACACCCCAATGCTCAACATAACACTGATCCTCCACTTCAGTCCTACCCATCTAATCCTCAGCTTAGTTTTTCATTCAGAAGACTCTTCCACAGCACCCCAGTGAAGCTTTTCTCATTCTTTGGTACTCTTCTCTTTGCTCTCTTTCTCTATGGTTCTGTTTCTTCAACCACCACTGTGGACCTACGTGGCCGCAAGAATGATGGTGATGATGACAAAGCCACTTCATTTTTGTTCCCTTTGTTTCCGAAATTTGGTGTTTTGGGGCAGAAGGATTTGAAGCTCCAACTGGGGAAGCTTGTTCAAAAAGAGAAGTTTTTGACGCAAAGAGATGTTGGTGATGGTTCTGGGGTTGTGGCCGTTGACTCTTCATCCGTTTTTCCAGTCAGTGGAAATGTTTATCCAGATGGGTTGTATTTCACTATTTTACGTGTTGGAAATCCTCCAAAAAGTTATTTTCTTGATGTGGACACAGGGAGTGATTTAACTTGGATGCAGTGTGATGCTCCATGCAGAAGCTGTGGGAAGGGAGCACATGTTCAATACAAGCCAACAAGATCCAATGTAGTATCATCTGTGGACTCTCTCTGTTTGGATGTTCAGAAAAATCAGAAGAATGGACATCATGATGAAAGTTTGCTACAGTGCGACTATGAAATTCAATATGCAGATCATAGTTCTTCCTTGGGGGTTCTTGTTAGAGATGAGCTTCATCTTGTAACTACTAATGGATCCAAAACCAAGCTAAATGTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTAATTTTGAACACATTGGCTAAAACAGACGGAATCATGGGATTGAGTAGGGCAAAAGTCAGCCTACCCTACCAGTTAGCTAGTAAAGGGCTTATTAAGAATGTGGTTGGTCATTGCCTTAGCAATGATGGAGCTGGCGGTGGATACATGTTCTTAGGTGATGATTTTGTGCCATATTGGGGTATGAATTGGGTACCCATGGCCTATACCCTTACTACGGATTTATACCAAACTGAGATTCTTGGAATCAATTATGGAAATCGTCAACTCAAATTTGATGGCCAAAGCAAAGTAGGAAAAGTGTTTTTTGATAGTGGCAGTTCTTATACATATTTCCCAAAAGAGGCATACTTGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGGGTTAGGACTTGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCAAATTTCCAAATCAGATCTATCAAAGATGTCAAGGATTACTTCAAGACCTTAACTCTTCGGTTCGGAAGCAAGTGGTGGATTTTGTCCACATTGTTTCAGATACCTCCAGAGGGTTACTTGATCATTAGTAACAAAGGCCATGTGTGCTTGGGAATCCTTGATGGTAGTAAAGTAAATGACGGATCCTCAATTATACTTGGAGACATTTCATTGAGAGGATATTCGGTTGTGTACGATAATGTGAAGCAAAAAATTGGTTGGAAGCGAGCAGACTGTGGCATGCCAAGCAGTAGATTAAGAAAGAAAAATAATTTCATCCCAGATAGTATGCTATAA
Predicted protein sequences of Glyma07g09980
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g09980.1 sequence type=predicted peptide gene model=Glyma07g09980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDDQSTQIKGVVIISLPPPDNPSLGKTITAFAFSNNPSPPPQLFIQPHQHQSQQTHPNAQHNTDPPLQSYPSNPQLSFSFRRLFHSTPVKLFSFFGTLLFALFLYGSVSSTTTVDLRGRKNDGDDDKATSFLFPLFPKFGVLGQKDLKLQLGKLVQKEKFLTQRDVGDGSGVVAVDSSSVFPVSGNVYPDGLYFTILRVGNPPKSYFLDVDTGSDLTWMQCDAPCRSCGKGAHVQYKPTRSNVVSSVDSLCLDVQKNQKNGHHDESLLQCDYEIQYADHSSSLGVLVRDELHLVTTNGSKTKLNVVFGCGYDQEGLILNTLAKTDGIMGLSRAKVSLPYQLASKGLIKNVVGHCLSNDGAGGGYMFLGDDFVPYWGMNWVPMAYTLTTDLYQTEILGINYGNRQLKFDGQSKVGKVFFDSGSSYTYFPKEAYLDLVASLNEVSGLGLVQDDSDTTLPICWQANFQIRSIKDVKDYFKTLTLRFGSKWWILSTLFQIPPEGYLIISNKGHVCLGILDGSKVNDGSSIILGDISLRGYSVVYDNVKQKIGWKRADCGMPSSRLRKKNNFIPDSML*