SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19610 | AT | Annotation by Michelle Graham. TAIR10: GNOM-like 2 | chr5:6617746-6622045 REVERSE LENGTH=1375 | SoyBase | E_val: 0 | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0032012 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ARF protein signal transduction | SoyBase | N/A | ISS |
| GO:0050790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0090406 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: pollen tube | SoyBase | N/A | ISS |
| GO:0005086 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ARF guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| KOG0928 | KOG | Pattern-formation protein/guanine nucleotide exchange factor | JGI | ISS | |
| PTHR24689 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24689:SF19 | Panther | JGI | ISS | ||
| PF01369 | PFAM | Sec7 domain | JGI | ISS | |
| UniRef100_G7KNH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pattern formation protein EMB30 n=1 Tax=Medicago truncatula RepID=G7KNH6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1L4G7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1L4G7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g09670 not represented in the dataset |
Glyma07g09670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g32140 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g087800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g09670.2 sequence type=CDS gene model=Glyma07g09670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTAACACCGAAGTTGGGGCAGTTCTAGCAGTGATTCGTCGTCCAAAATTCACTCCTCTCTACAACATCCCTTCCTCCGAAGATAGCTACACGACTCTTCCCTCATCAGTTCCTTACGATCCCTTCGCTCTCTCATTTTCAACCTTCAGCAAGAGTGGCGCACCATCTGCCCTCTCTTCCGTTCTCAAGATTCTCAAGTTTGAAGATGCCGTGATGATGAAGATATTGCAAGTCTTGACGGGGATAATGCACCACAGGGCTTCGGCTTTGCTAGCGGATCAATCTGTTTGCACCCTCGTCGACACGTGCTTTCAAGTTGTTCAACAATCGGCGACAAGAGGGGATTTGCTGCAGAGGAGTGCGAGGTACACCATGCACGAGCTTATCCAAGTTGTGTTTGCCAGGTTAACAGAGATTGAGCCTAAGGATAGAGAAGGGGATTCAGAATCAGGCATGGAGGATGGTGATGAGGGTGGTGGTTTGGAATCTGGCTACGGTGTTCGTTGCGCCATTGACATCTTTCATTTTTTTTTTGAGGCAGATGGGTCTACTTCTCACACTGCTGATGAAGATGTTCAGATTTTTGCCTTGGTTTTGATCAACTCAGCCACTGAACTGAGTGGGGATGAGATAGGGAAGCGCCCAAAGCTCTTGAGGATGATCCAAGATGACTTGTTTCACCATTTGATTTACTATATATTGGACATGATGCCCAACAGATATATAAGCCGCACTCCAAGGATTGAGGCAGCCGATGTGGGACTTGGGTATTTCCCAATACACCCCCTTCACGCCCAGCACTTATTGGGCTTGGTGCGTGAACCACAAATGGTGGGTACTCGTCGCAGCGGAAGTGAAGACGAGGTCCCAAGGTCAGAACCTGCTCTGATACCATGCTTTAGATTTTATCTAGAAAGTTTCTGGCTGCCAAGAGAGTCACAAAATATTCAATGTGTGCTCGAAGCCTTCATGGAGAGGTTTTATGATCATCAATCCTCAGACATGTTTGCAAACAAGGACACTAAGATGACAGAGGAGGAATTCATCAGGAACAATAGAGCAATCAATGCAGGAAAGGATTTGCCTAGAGAGTACCTTTCTGAGCTTTTCCAATCCATTTCCACTTGTGCATTTTCTCTAGAGCAAACCACTGGGTCACTAGACATGAATCCAAGTAGAATATGTAGAGATATGTTTGCCTGCATTGCCGGTCCAGTGGTGGCTGCTCTATCATCATTCTTTGAGCATGCTGATGAAGAGGAGATGCTCCATGAGTGCATTGAAGGGTTATTATCAGTTGCAAGGATTTGCCAGTATGGACTAGAAGATACCCTTGATGAGTTCATAACATCATTTTGCAAATTCACAACACTACTAAATCCTTATGCTTCTATAGAAGAGACCATGTTCACCTTTAGTCATGATTTGAAGCCCAGGATGGCAACAGTTGCTGTTTTCACCATAGCAAACTACTTCAGAGACTCAATTCAAGGAGGTTGGAAGAACATTGTCGATTGCTTGTTAAAACTCAAAAAGATTAAACTACTACCTCAGTCGGTCGTTGATTTTAAGTCGGTGGATGTCGCAACAACACCTGAATCAGGTGTCATGTCTCCAACTGATGATCATAAATTTGGCAGTCAGAGAGTTGCTAGCATGATCTCTTGGTTTTCACATCTTTCCATCTTCAGCAACTATTCAAACATCCCCAAAGAATGCTTACAAAGCCTTGGGAGATCTTTGATATTTGCAGCTGCTGGAAAAGGCCAAAAGTTCACCAATGTTCACAAATTCCACATATTCTGGCCAAACTTCCATGAGTATCTACTTTCAGTTGCTCAGTTTCCAATGTTCTCCCCAATCCCATTTGCAGAAAAAGCTATTTTAGGCCTTCTCAGGGTCTGTCTCAAGCTTTTTTCTGCACCAAGAGATGACAAACTAGCCGAGGAACTTATTTTCAAGTCCATAACCTTAATGTGGAAGCTTGATAAAGAAATCTTTGACACTTGTCACGATGTCATATCACAATTAATTAGCAAAATACACATTGAATACCCTGCAAATGCTTTGATAGCATTATTTTCTGATGGCTCTTGCATATCGGGCACAAACTATGCATATTGCGTAGTTTGTGCCTTTGGTTGTTTCTTAGCCAGGAACAGTTCAGTGGACAAAAAGAAGATACTTGACCTATTGGCTGATTCAGTAAAATTGTTGATTCACTGGCACAGAAATCAATACTCGGATCCGGGAAGCAATGTTAGTATTGGTGTCATAAGTTTCAATCTAGCTGAGGAACTGCATTACATGTCATCAAACCGCATCAACTATTTCAACTTTGTGATTTTTGCCATGGTTGATGAGCTTCATGAGAAGATGTTGGAGTACTCAAGGAGGGAAAATGCTGAGAGGGAATCAAGGAGTACGGAAGAAACCCTTAAGCTTGCAATGGAGCTGTTGTCAGATATGTACTTGCAGTCATTGAGACAAATAACCGAGAGTTCGGGATTTAGGACATTCTGGTCAGGCATATTGAGAAGGAAGGACACATGCATGAAGGCTGATTTGGGACAGTATGGTCCATCAACTTTGGGTGAAATAATCCCTGATTTGTTGAGAAAGATCATAACACAAATGAAGGAAGAGGGAATTTTGGAACCAAGATATGTGGGAGATTACATATACTTAGATACAGTGGATATATGCCCTCATCTCAAGGATGAGTTATTTCCCTTATAG
>Glyma07g09670.2 sequence type=predicted peptide gene model=Glyma07g09670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLNTEVGAVLAVIRRPKFTPLYNIPSSEDSYTTLPSSVPYDPFALSFSTFSKSGAPSALSSVLKILKFEDAVMMKILQVLTGIMHHRASALLADQSVCTLVDTCFQVVQQSATRGDLLQRSARYTMHELIQVVFARLTEIEPKDREGDSESGMEDGDEGGGLESGYGVRCAIDIFHFFFEADGSTSHTADEDVQIFALVLINSATELSGDEIGKRPKLLRMIQDDLFHHLIYYILDMMPNRYISRTPRIEAADVGLGYFPIHPLHAQHLLGLVREPQMVGTRRSGSEDEVPRSEPALIPCFRFYLESFWLPRESQNIQCVLEAFMERFYDHQSSDMFANKDTKMTEEEFIRNNRAINAGKDLPREYLSELFQSISTCAFSLEQTTGSLDMNPSRICRDMFACIAGPVVAALSSFFEHADEEEMLHECIEGLLSVARICQYGLEDTLDEFITSFCKFTTLLNPYASIEETMFTFSHDLKPRMATVAVFTIANYFRDSIQGGWKNIVDCLLKLKKIKLLPQSVVDFKSVDVATTPESGVMSPTDDHKFGSQRVASMISWFSHLSIFSNYSNIPKECLQSLGRSLIFAAAGKGQKFTNVHKFHIFWPNFHEYLLSVAQFPMFSPIPFAEKAILGLLRVCLKLFSAPRDDKLAEELIFKSITLMWKLDKEIFDTCHDVISQLISKIHIEYPANALIALFSDGSCISGTNYAYCVVCAFGCFLARNSSVDKKKILDLLADSVKLLIHWHRNQYSDPGSNVSIGVISFNLAEELHYMSSNRINYFNFVIFAMVDELHEKMLEYSRRENAERESRSTEETLKLAMELLSDMYLQSLRQITESSGFRTFWSGILRRKDTCMKADLGQYGPSTLGEIIPDLLRKIITQMKEEGILEPRYVGDYIYLDTVDICPHLKDELFPL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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