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Report for Sequence Feature Glyma07g09660

Feature Type:gene_model
Chromosome:Gm07
Start:8073159
stop:8081677
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g09660
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24495AT Annotation by Michelle Graham. TAIR10: MUTS homolog 7 | chr3:8912418-8918086 REVERSE LENGTH=1109 SoyBaseE_val: 0ISS
GO:0000710GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic mismatch repair SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006298GO-bp Annotation by Michelle Graham. GO Biological Process: mismatch repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010389GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016458GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing SoyBaseN/AISS
GO:0034968GO-bp Annotation by Michelle Graham. GO Biological Process: histone lysine methylation SoyBaseN/AISS
GO:0043570GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of DNA repeat elements SoyBaseN/AISS
GO:0045910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA recombination SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0000228GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0032301GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MutSalpha complex SoyBaseN/AISS
GO:0000400GO-mf Annotation by Michelle Graham. GO Molecular Function: four-way junction DNA binding SoyBaseN/AISS
GO:0003684GO-mf Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0032137GO-mf Annotation by Michelle Graham. GO Molecular Function: guanine/thymine mispair binding SoyBaseN/AISS
GO:0032138GO-mf Annotation by Michelle Graham. GO Molecular Function: single base insertion or deletion binding SoyBaseN/AISS
PTHR11361Panther DNA MISMATCH REPAIR MUTS RELATED PROTEINS JGI ISS
PTHR11361:SF31Panther MUTS HOMOLOG 6, MSH6 JGI ISS
PF00488PFAM MutS domain V JGI ISS
PF01624PFAM MutS domain I JGI ISS
PF05188PFAM MutS domain II JGI ISS
PF05192PFAM MutS domain III JGI ISS
UniRef100_G7KNH7UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein Msh6-2 n=1 Tax=Medicago truncatula RepID=G7KNH7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002338F1FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338F1F related cluster n=1 Tax=unknown RepID=UPI0002338F1F SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g09660
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g09660 not represented in the dataset
Glyma07g09660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09660
ParalogEvidenceComments
Glyma09g32150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09660 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g087700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g09660
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g09660
>Glyma07g09660.2   sequence type=CDS   gene model=Glyma07g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTAGATATTTTCACCGAATTTCCGGCGACCGGCCACCCACCACTCCGCCGGTTCAGCAGCCCAACGGCAACGTCACTGCCGCTGTCAACCAACGGCCACCGGCCGATGACGTCAGAGGAACCGACACGCCACCGGAAAAGGTGCCGCGGCGCGTTTTACCGGCAAATTTCGCGCCAAACGAGAAAGAATCTGGTCCCTCCCTGTTTGAAAGCATCATGCACAAATTTGTCAAGGTCGACGACAACGAAAGAGTTACTCAGAGGAGCCACTCATTGAATGGTAGTTTGCCTAAATCTTCTTTACCAGTGGGAATATGTGCTGATACTGATTGTAAAGTGGTGAACAAGGCAGAAGCAGCTTTTCAACCTTTGGTGAAAGTGAAAGATAATGCTGTGAATTTCAAGGAAAAGGCTAATCAAGAGAACATTGTGGTGGTTGAAACTGATGATAATGTCACTGGACCAGAAACCCCAGGGATGCTGCCTCTTGCTTCTCATGTGAAGCGAAGTCGAGAGGATGGATCCAAGTTTGGTTCGTTGCTGAATTCTGGCAAACGAGTTAGATTTCTTGACGGTTCATTGGAATTGGACATGACTAAGAAGGAAGCAGAAGTGGCTAGCAAGTTTGAATGGCTCGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGCCGGATAATCCTTTGTATGACAGGACAACGCTTTATATTCCTCCAGAAGTTTTGGGGAAAATGTCAGCATCACAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTTTGCTTTTTTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCCGACATTGGCCATAAGGAGCTTGATTGGAAAATAACGTTAAGTGGTGTTGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTCTAAAGCTGGTTGCACGTGGGTATAAGGTTGGACGAGTGGAGCAATTAGAGACATCTGGAGAAGCAAAGTCTAGAGGAGCTAACTCTGTTGTTCGGAGAAAATTAGTTCAGGTACTCACTCCATCAACCAATGTGGATGGTAATATTGGTCCTGATGCTGTTCACCTTCTTGCAATAAAAGAGGAAAACAATGTCTTGGATAATGGTGCAGTTGTGTATGGATTTGCTTTTGTTGATTGTGCTCGGCTTAGATTTTGGGTTGGCTCCATAGACGACGATGCTTCCTGTTCTGCTTTGGGGGCTTTATTGGTGCAAGTGTCACCCAAGGAAGTTATATATGATAGTAGAGGTTTGTCCAAAGAAGCTCAGAAGGCACTTAGAAAATTCTCGTTGAATGGTTCGAGGACACTACAGTTCACTCCAGTTCAGTCCATCACTGACTTGGTGAACAATGAAATTAGGGATTTAATTCACTCAAAGGGATACTTCAAAGGCTCGTCTCATTTGCTGGATCATGTACTGAGCAATGTGATTCATCGTGAAATCACCTTGTCTGCCCTAGGCAGGCTGATTGGTCATCTGGATAGATTGATGCTGGATGATGTCCTACAGAATGGGGATTTATATCCATACCAAGTTTACAAGGGTTGCCTCAAAATGGATGGTCCAACAATGATAAATCTAGAACTCTTTTTCAATAATGAGGATGGTGGCAAATCAGGTTCATTGTACAATTGTCTTGATAAGTGTGTAACTTCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGCTGTCCATTAATAGATCCTGAAATAATTAACAAAAGGCTTGATGTAGTGGATGATCTAATGGCTAACCCAGAGATTGTGCCACATATTGCTCAACATCTTCGCAGGCTTCCAGACTTGGAACATTTGCTTGGCCGAATTAAGTCCAGCCTTCAATTATCAGGCCCTCTCTTATTGCCCCTATTGGGAAAGAAAATATTGAAGCAGAGGGTGAAAGTGTTTGGATCACTTGTGAGAGGCCTTCGGACTGCTTTGAGTTTGTTGCTTCTTCTACAGAAAGAGCAGCCTCTAATATCGTCTTTGACCAAAGTTTTTAAACTTCCAATTCTGACTGGTAGTAACGGGCTTGATCAATTTCTTGCTCAGTTTGAAGCAGCAGTAGACAGTGACTTCCCAAATTACCAGAATCACAATGTTGCAGATTCTGATGCTGAAACACTCAAAATACTTGCTGAATTATTTTTGGAGAAAGCTGCTCAGTGGTTTGAAGTTGTTCATGCCATCAATTGCATTGATGTATTAAGATCTTTTGCTGTTACTTCTACCTTTTCTTGCGGAACTATGTCTAGGCCAGTTATAGTGGCATCAAAAGGTACAAGTAAAGACAATGGCAGAACAGTGCTCAAGATGAAGGGACTATGGCATCCATTTGCCCTTGGAGACAGTGGATGTTTGCCTGTCCCCAATGATGTGATCCTTGGTGAGAATGAAGATGGGTTGTATCCTCGAACTTTGCTGCTTACTGGACCAAACATGGGTGGAAAGTCAACACTTCTGCGTTCCACCTGTCTGGCTGTTATTATGGCCCAGCTAGGCTGTTATGTGCCATGTGAAAGTTGTGTTCTCTCAGCTGTGGATATCATCTTCACACGACTTGGAGCCAAAGATAGAATCATGACAGGCGAGAGTACCTTCTTTATTGAGTGTACTGAAACGGCATCGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCTTATGCAGTATTCCGGCATCTGATTGAAAAAGTTAACTGTCGCATGCTATTTGCCACCCACTACCATCCACTCACGAAAGAGTTTGCTTCTCATCCACGTGTTATAATGCAACACATGGCTTGTGCTTTCAATTCAAAATCGGATACCCACTCCATGCGTGATCAGGAACTAGTTTTCCTATATCGGCTTGCCTCCGGACCATGTCCAGAGAGCTACGGCTTGCAGGTGGCCCTCATGGCTGGAATCCCAGAAAAAACGGTAAACATTGCTTCTAAGTCAAGCCAGAAGATGAAAAAATCAATTGGACAAAGTTTTAGGTCAAGCGAACAGAGATCAGAGTTCTCAACCCTTCATGAAGAATGGTTGAAGACCTTGGTATCTATCTCACGCATAGAGGATTGTAACTCTTTGGATGAAGATGCTTTAGATACATTAATCTCTCTGTGGTATGAACTTAAAACTTCATTTATATCAGGCAAGTAA
Predicted protein sequences of Glyma07g09660
>Glyma07g09660.2   sequence type=predicted peptide   gene model=Glyma07g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRYFHRISGDRPPTTPPVQQPNGNVTAAVNQRPPADDVRGTDTPPEKVPRRVLPANFAPNEKESGPSLFESIMHKFVKVDDNERVTQRSHSLNGSLPKSSLPVGICADTDCKVVNKAEAAFQPLVKVKDNAVNFKEKANQENIVVVETDDNVTGPETPGMLPLASHVKRSREDGSKFGSLLNSGKRVRFLDGSLELDMTKKEAEVASKFEWLDPSRIRDANGRRPDNPLYDRTTLYIPPEVLGKMSASQKQYWSVKCKYMDVLLFFKVGKFYELYEMDADIGHKELDWKITLSGVGKCRQVGISESGIDDAVLKLVARGYKVGRVEQLETSGEAKSRGANSVVRRKLVQVLTPSTNVDGNIGPDAVHLLAIKEENNVLDNGAVVYGFAFVDCARLRFWVGSIDDDASCSALGALLVQVSPKEVIYDSRGLSKEAQKALRKFSLNGSRTLQFTPVQSITDLVNNEIRDLIHSKGYFKGSSHLLDHVLSNVIHREITLSALGRLIGHLDRLMLDDVLQNGDLYPYQVYKGCLKMDGPTMINLELFFNNEDGGKSGSLYNCLDKCVTSSGKRLLRNWICCPLIDPEIINKRLDVVDDLMANPEIVPHIAQHLRRLPDLEHLLGRIKSSLQLSGPLLLPLLGKKILKQRVKVFGSLVRGLRTALSLLLLLQKEQPLISSLTKVFKLPILTGSNGLDQFLAQFEAAVDSDFPNYQNHNVADSDAETLKILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSTFSCGTMSRPVIVASKGTSKDNGRTVLKMKGLWHPFALGDSGCLPVPNDVILGENEDGLYPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLSAVDIIFTRLGAKDRIMTGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHPLTKEFASHPRVIMQHMACAFNSKSDTHSMRDQELVFLYRLASGPCPESYGLQVALMAGIPEKTVNIASKSSQKMKKSIGQSFRSSEQRSEFSTLHEEWLKTLVSISRIEDCNSLDEDALDTLISLWYELKTSFISGK*






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