Glyma07g09640 - SoyBase

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Report for Sequence Feature Glyma07g09640

Feature Type:	gene_model
Chromosome:	Gm07
Start:	8054244
stop:	8061068
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g09640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24503	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 2C4 \| chr3:8919732-8923029 REVERSE LENGTH=501	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009699	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid biosynthetic process	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0004029	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0050269	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coniferyl-aldehyde dehydrogenase activity	SoyBase	N/A	ISS
KOG2450	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF46	Panther	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_G7KNI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=1 Tax=Medicago truncatula RepID=G7KNI3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KIS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIS3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g09640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09640

Paralog	Evidence	Comments
Glyma09g32170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g087500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g09640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g09640

Limit To All Plant Sequences

>Glyma07g09640.2   sequence type=transcript   gene model=Glyma07g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAATTGACATAATAAACAAACAATTCTATTATAATTCTGGCAGGCTCGTGAGTTGTATATGACATGTTTCTCTGTGCACCCATTGTTCTTGTCTCAAAGTAAAAGTGTGTGTATATAAAAGAGGTCCCTCTTCTCAGTTCTTTGAAAACCTCAACAACTCAACACGTTGCCTCTACTCTCTGCAGCTTTTAATTTGTTTGCAGGCACACAACCATGGCTGCTCTCTCCAACGGCCACGACGCTTCCTTCTTCAAGATGCCCTCCATCAAGTTCACCAAGCTCTTCATCAATGGAGAATTTGTTGATTCCCTTTCAGGAAAGAGCAAAAATCATGATGAAATGGGCAGACTTAATTGATCAGAACATCGAGGAAATAGCAGCATTGGATGCCATTGATGCAGGGAAGTTGTACCATTGGTGCAAGGCTGTTGACATTCCTGCTGCAGCAAATACTATTCGTTACTATGCCGGTGCTGCGGATAAAATTCATGGGGAGGTCTTAAAAGCGTCTAGGGAGTTCCATGCATATACTTTGTTAGAACCAATTGGTGTTGTAGGACACATTATTCCGTGGAATTTCCCCAGCACCATGTTTGTTGCCAAGGTGAGTCCTTCCTTGGCTGCTGGTTGCACAATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCGGCCTTGTTTTATGCTCATCTTGCTAAGCTGGCTGGAATTCCAGATGGAGTGCTTAATGTAGTACCCGGATTTGGCCAAACTGCAGGTGCTGCAATAAGCTCACACATGGACATTGATAAGGTAAGCTTTACGGGTTCAACAGAAGTGGGGCGTGAAGTAATGCGTGCTGCAGCTAATAGTAATTTGAAACCAGTTTCACTTGAGCTAGGAGGCAAGTCACCCGTCATAGTTTTTGATGATGCTGATGTAGATAAAGCTGCTGGACTTGCTCTCATGGGCATCCTATTTAATAAGGGAGAAATTTGTGTTGCAGGCTCCCGTGTGTTGGTTCAGGAAGGAATCTATGATGAATTTGAGAAGAAATTGGTGGAAAAAGCAAATGCTTGGGTGGTTGGTGATCCTTTTGATCCTAAAGTTCAGCAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAGATTCTTTCCTATATCGAGCATGGAAAGAAAGAAGGTGCAACCCTTTTGACAGGGGGCAAAAGAGTGGGCAACAAGGGTTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATAGTACAAGATGAAATATTTGGCCCTGTGATGGCTTTGATGAAGTTTAAGACTATTGAAGATGCAATTAAGATTGCCAACAATACAAGGTATGGCCTAGCATCAGGCATTGTGACAAAGAGTTTGGACACAGCCAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAACTGTTATTTTGCCTTTGGGGATGACATTCCTTATGGGGGGTACAAGATGAGTGGATTTGGAAGAGATTTTGGAATGGAAGCCCTACACAAGTATCTTCAAGTTAAATCTGTTGTAACTCCCATTTACAATTCTCCCTGGCTTTGATTTTTTTTATTTTTTTTTGTGTTGTGTGGATATAAACAATGGTGAACTATAGAAGAGCTTCCTTAAACGTATACTTCATCAAATTAATAAGTGTTTAAATACATTTTTAGTCATTGTAATTTAATATTTTTTTATTTTTCATTTTTATAAAATTATTTTTTATTTTATTTTTAGGTCTTGTAAATTATGTTTGTTTTATTTT

Coding sequences of Glyma07g09640

Limit To All Plant Sequences

>Glyma07g09640.1   sequence type=CDS   gene model=Glyma07g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTCTCTCCAACGGCCACGACGCTTCCTTCTTCAAGATGCCCTCCATCAAGTTCACCAAGCTCTTCATCAATGGAGAATTTGTTGATTCCCTTTCAGGGAAGGAGTTTGAAACAATAGATCCCAGGACAGGAGAAGTGATTACAAGAATCGCAGAAGGAGCAAAAGAAGACATTGATGTTGCTGTCAAAGCGGCACGTGACGCTTTCGACTATGGTCCATGGCCCCGTATGCCCGGTGCTGAAAGAGCAAAAATCATGATGAAATGGGCAGACTTAATTGATCAGAACATCGAGGAAATAGCAGCATTGGATGCCATTGATGCAGGGAAGTTGTACCATTGGTGCAAGGCTGTTGACATTCCTGCTGCAGCAAATACTATTCGTTACTATGCCGGTGCTGCGGATAAAATTCATGGGGAGGTCTTAAAAGCGTCTAGGGAGTTCCATGCATATACTTTGTTAGAACCAATTGGTGTTGTAGGACACATTATTCCGTGGAATTTCCCCAGCACCATGTTTGTTGCCAAGGTGAGTCCTTCCTTGGCTGCTGGTTGCACAATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCGGCCTTGTTTTATGCTCATCTTGCTAAGCTGGCTGGAATTCCAGATGGAGTGCTTAATGTAGTACCCGGATTTGGCCAAACTGCAGGTGCTGCAATAAGCTCACACATGGACATTGATAAGGTAAGCTTTACGGGTTCAACAGAAGTGGGGCGTGAAGTAATGCGTGCTGCAGCTAATAGTAATTTGAAACCAGTTTCACTTGAGCTAGGAGGCAAGTCACCCGTCATAGTTTTTGATGATGCTGATGTAGATAAAGCTGCTGGACTTGCTCTCATGGGCATCCTATTTAATAAGGGAGAAATTTGTGTTGCAGGCTCCCGTGTGTTGGTTCAGGAAGGAATCTATGATGAATTTGAGAAGAAATTGGTGGAAAAAGCAAATGCTTGGGTGGTTGGTGATCCTTTTGATCCTAAAGTTCAGCAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAGATTCTTTCCTATATCGAGCATGGAAAGAAAGAAGGTGCAACCCTTTTGACAGGGGGCAAAAGAGTGGGCAACAAGGGTTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATAGTACAAGATGAAATATTTGGCCCTGTGATGGCTTTGATGAAGTTTAAGACTATTGAAGATGCAATTAAGATTGCCAACAATACAAGGTATGGCCTAGCATCAGGCATTGTGACAAAGAGTTTGGACACAGCCAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAACTGTTATTTTGCCTTTGGGGATGACATTCCTTATGGGGGGTACAAGATGAGTGGATTTGGAAGAGATTTTGGAATGGAAGCCCTACACAAGTATCTTCAAGTTAAATCTGTTGTAACTCCCATTTACAATTCTCCCTGGCTTTGA

>Glyma07g09640.2   sequence type=CDS   gene model=Glyma07g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAATTTGTTGATTCCCTTTCAGGAAAGAGCAAAAATCATGATGAAATGGGCAGACTTAATTGATCAGAACATCGAGGAAATAGCAGCATTGGATGCCATTGATGCAGGGAAGTTGTACCATTGGTGCAAGGCTGTTGACATTCCTGCTGCAGCAAATACTATTCGTTACTATGCCGGTGCTGCGGATAAAATTCATGGGGAGGTCTTAAAAGCGTCTAGGGAGTTCCATGCATATACTTTGTTAGAACCAATTGGTGTTGTAGGACACATTATTCCGTGGAATTTCCCCAGCACCATGTTTGTTGCCAAGGTGAGTCCTTCCTTGGCTGCTGGTTGCACAATGGTCCTCAAGCCTGCTGAACAAACACCTCTCTCGGCCTTGTTTTATGCTCATCTTGCTAAGCTGGCTGGAATTCCAGATGGAGTGCTTAATGTAGTACCCGGATTTGGCCAAACTGCAGGTGCTGCAATAAGCTCACACATGGACATTGATAAGGTAAGCTTTACGGGTTCAACAGAAGTGGGGCGTGAAGTAATGCGTGCTGCAGCTAATAGTAATTTGAAACCAGTTTCACTTGAGCTAGGAGGCAAGTCACCCGTCATAGTTTTTGATGATGCTGATGTAGATAAAGCTGCTGGACTTGCTCTCATGGGCATCCTATTTAATAAGGGAGAAATTTGTGTTGCAGGCTCCCGTGTGTTGGTTCAGGAAGGAATCTATGATGAATTTGAGAAGAAATTGGTGGAAAAAGCAAATGCTTGGGTGGTTGGTGATCCTTTTGATCCTAAAGTTCAGCAAGGGCCTCAGGTTGACAAGAAGCAATTTGAAAAGATTCTTTCCTATATCGAGCATGGAAAGAAAGAAGGTGCAACCCTTTTGACAGGGGGCAAAAGAGTGGGCAACAAGGGTTACTACATTGAGCCTACAATTTTCTCTAATGTTAAGGAGGACATGCTTATAGTACAAGATGAAATATTTGGCCCTGTGATGGCTTTGATGAAGTTTAAGACTATTGAAGATGCAATTAAGATTGCCAACAATACAAGGTATGGCCTAGCATCAGGCATTGTGACAAAGAGTTTGGACACAGCCAACACTGTGTCAAGGTCCATTCGTGCAGGCATTGTTTGGATCAACTGTTATTTTGCCTTTGGGGATGACATTCCTTATGGGGGGTACAAGATGAGTGGATTTGGAAGAGATTTTGGAATGGAAGCCCTACACAAGTATCTTCAAGTTAAATCTGTTGTAACTCCCATTTACAATTCTCCCTGGCTTTGA

Predicted protein sequences of Glyma07g09640

Limit To All Plant Sequences

>Glyma07g09640.1   sequence type=predicted peptide   gene model=Glyma07g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAALSNGHDASFFKMPSIKFTKLFINGEFVDSLSGKEFETIDPRTGEVITRIAEGAKEDIDVAVKAARDAFDYGPWPRMPGAERAKIMMKWADLIDQNIEEIAALDAIDAGKLYHWCKAVDIPAAANTIRYYAGAADKIHGEVLKASREFHAYTLLEPIGVVGHIIPWNFPSTMFVAKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGQTAGAAISSHMDIDKVSFTGSTEVGREVMRAAANSNLKPVSLELGGKSPVIVFDDADVDKAAGLALMGILFNKGEICVAGSRVLVQEGIYDEFEKKLVEKANAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKKEGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIVQDEIFGPVMALMKFKTIEDAIKIANNTRYGLASGIVTKSLDTANTVSRSIRAGIVWINCYFAFGDDIPYGGYKMSGFGRDFGMEALHKYLQVKSVVTPIYNSPWL*

>Glyma07g09640.2   sequence type=predicted peptide   gene model=Glyma07g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENLLIPFQERAKIMMKWADLIDQNIEEIAALDAIDAGKLYHWCKAVDIPAAANTIRYYAGAADKIHGEVLKASREFHAYTLLEPIGVVGHIIPWNFPSTMFVAKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGQTAGAAISSHMDIDKVSFTGSTEVGREVMRAAANSNLKPVSLELGGKSPVIVFDDADVDKAAGLALMGILFNKGEICVAGSRVLVQEGIYDEFEKKLVEKANAWVVGDPFDPKVQQGPQVDKKQFEKILSYIEHGKKEGATLLTGGKRVGNKGYYIEPTIFSNVKEDMLIVQDEIFGPVMALMKFKTIEDAIKIANNTRYGLASGIVTKSLDTANTVSRSIRAGIVWINCYFAFGDDIPYGGYKMSGFGRDFGMEALHKYLQVKSVVTPIYNSPWL*

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