Glyma07g09430 - SoyBase

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Report for Sequence Feature Glyma07g09430

Feature Type:	gene_model
Chromosome:	Gm07
Start:	7871313
stop:	7875853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g09430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G13250	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr4:7684417-7686691 REVERSE LENGTH=496	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0034256	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chlorophyll(ide) b reductase activity	SoyBase	N/A	ISS
KOG0725	KOG	Reductases with broad range of substrate specificities	JGI		ISS
PTHR24314	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24314:SF37	Panther		JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7KPV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Oxidoreductase n=1 Tax=Medicago truncatula RepID=G7KPV9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KIQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIQ4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g09430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09430

Paralog	Evidence	Comments
Glyma09g32370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g085700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g09430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g09430

Limit To All Plant Sequences

>Glyma07g09430.2   sequence type=transcript   gene model=Glyma07g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCTACTATGTTCCTTGTTACGTTTCCAGTTACACATCCCTTAGATCAAGCTTCGTCTGGATATTTTTTTCCACCAGAAAATTACAAAAACATAATTTTCAGTTTTCACCAAAAAGATAACAATAAATAAAGCAACAAGCCATCTCAAATTGAACAGCTTTCAGTCACCAAACAAACATTTTTCCATGAAACTTGCATCTACCATTATTATTTTATCACATCCATGGCCACAGTTGTGAAGCTACATGTTGTCCCAGAATGTTTGAACCAACAGAAAACGAGGTCGCTCAGGAGGGGATTTGGCTCATGCCCTTCACCTGGGGTGCTTGGTTTTGGCCATTATTGTGATCGGTTCTCTGTGAAAGTGTGCCGGGCTTTTAGGACTGAGGATGGTGGGGATGTAAAGGAGAAAAAGTTACGAAATTTGAAGAAAAATGAAGAGAAAACCAAAAGGGAAAGTGGGTTTTGGAGTTCCCTCAAGTCTATCTTGTTGAGGAATTTCATGGTGGGTTCAAAATCAGATGATGAGTATCGCCAAGCTGTGGCGAAGGTGGAGGGTCTCCTATCCTCGATCGCCATTCAAATTGGAAGATATATTGTGACTATGATGAGCACTGGGGTCATCCTTTCAATTGGATTTCAGATGTCAGGTGGAGACAGTCAGATGGATGCATTAATATGGTATAGTTGGCTAGGAGGAGTAATCATTGGGACAATGATAGGTGCTAACATGGTGTTGGAGGAACATTGTCGTGCCGGCCCACGTAATGTTGTCATAACGGGGAGTACAAGGGGATTGGGTAAAGCCTTAGCTCGGGAGTTTCTTCTTTCTGGAGATCGTGTGATTGTTACCTCTCGCAGCCCCGAGTCTGTGCAAGCAACTATCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGCTCTTCTCTGACAAAGCTTTCACATGCAAAAGTTGTAGGCATTGCTTGTGATGTTTGTGAACCTCATGATGTGCAGAGACTGGCTAACTTCGCTGTCAAAGAACTTGGTCATATTGACATTTGGATAAACAATGCCGGAACAAATAAAGGTTTTAGACCATTGCTTCAGTTTAGTGACGAAGATATTAAACAGATTGTCTCAACAAATTTGGTTGGATCTATCCTCTGCACTCGAGAAGCCATGCGTGTTATGAGAAACCAAGCCATTGCAGGTCACATATTTAATATGGATGGTGCAGGTTCTGGAGGCTCTAGCACACCTTTGACTGCTGTATATGGTTCTACAAAGTGTGGCCTTAGGCAACTTCAAGGATCACTATTAAAGGAGTGCAAGCGATCCAAAGTAGGTGTCCATACTGCATCTCCAGGCATGGTTCTTACAGATCTGCTTTTAAGGGAAGAGCATTATATGCAGCTGAAGCAGACCGACTTCGTAATTGGGCTGAAGATCGAGCCCGATTTTCTTTCACCGATGCAATGGAAATGTACACAGAGAACACCTGGTTATCTGTCTTCTCACTTTCAGTTGTCTGTGCCTTCATAATTCTTTCCAGCACAGGCAGCAATTTGCCTGGAACATGATGATGTCTTGCTGCCAATGCAAAAGTGCATTTGCTTTTGTGGACAGATAAGTGGTGCCTGAAATCATCATCAAGACAATAGAATGAATCTAAAGTCTAAATTATAAACAAAGTGGATCTGTTTTTTTCCCACCATGTCCACCTAAACAATTATCATTTGACACACTTAGTTGTCTGTGACCTTTAGCTCAGACATTTGGCTCCCCATGTACTATATAGGCAGCCCTGCAATCAGCATTCTTCATTGAGATGCTTATAGTCATAGTATGTTACTATGTATAGCCTTTCATTAAATTGTAGACTAGTGAAATCTCATATTTTCTACCCAATATATTTATTTGAATGTATATTTATCAGTGTGCTAAAATCTGAAATTTATATTGGTCATTGGACAACACTTTTGGATAATGTTATATACAGTTTTTTGTTACTGCACTACAGGTGTAAACTCAGT

Coding sequences of Glyma07g09430

Limit To All Plant Sequences

>Glyma07g09430.1   sequence type=CDS   gene model=Glyma07g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACAGTTGTGAAGCTACATGTTGTCCCAGAATGTTTGAACCAACAGAAAACGAGGTCGCTCAGGAGGGGATTTGGCTCATGCCCTTCACCTGGGGTGCTTGGTTTTGGCCATTATTGTGATCGGTTCTCTGTGAAAGTGTGCCGGGCTTTTAGGACTGAGGATGGTGGGGATGTAAAGGAGAAAAAGTTACGAAATTTGAAGAAAAATGAAGAGAAAACCAAAAGGGAAAGTGGGTTTTGGAGTTCCCTCAAGTCTATCTTGTTGAGGAATTTCATGGTGGGTTCAAAATCAGATGATGAGTATCGCCAAGCTGTGGCGAAGGTGGAGGGTCTCCTATCCTCGATCGCCATTCAAATTGGAAGATATATTGTGACTATGATGAGCACTGGGGTCATCCTTTCAATTGGATTTCAGATGTCAGGTGGAGACAGTCAGATGGATGCATTAATATGGTATAGTTGGCTAGGAGGAGTAATCATTGGGACAATGATAGGTGCTAACATGGTGTTGGAGGAACATTGTCGTGCCGGCCCACGTAATGTTGTCATAACGGGGAGTACAAGGGGATTGGGTAAAGCCTTAGCTCGGGAGTTTCTTCTTTCTGGAGATCGTGTGATTGTTACCTCTCGCAGCCCCGAGTCTGTGCAAGCAACTATCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGCTCTTCTCTGACAAAGCTTTCACATGCAAAAGTTGTAGGCATTGCTTGTGATGTTTGTGAACCTCATGATGTGCAGAGACTGGCTAACTTCGCTGTCAAAGAACTTGGTCATATTGACATTTGGATAAACAATGCCGGAACAAATAAAGGTTTTAGACCATTGCTTCAGTTTAGTGACGAAGATATTAAACAGATTGTCTCAACAAATTTGGTTGGATCTATCCTCTGCACTCGAGAAGCCATGCGTGTTATGAGAAACCAAGCCATTGCAGGTCACATATTTAATATGGATGGTGCAGGTTCTGGAGGCTCTAGCACACCTTTGACTGCTGTATATGGTTCTACAAAGTGTGGCCTTAGGCAACTTCAAGGATCACTATTAAAGGAGTGCAAGCGATCCAAAGTAGGTGTCCATACTGCATCTCCAGGCATGGTTCTTACAGATCTGCTTTTAAGTGGCTCAACTGTCCAAAACAGGCAGATGTTTAACATCATCTGTGAGCTTCCCGAAACTGTTGCTAGAACACTAGTTCCACGCATGCGGGTTGTTAAGGGAACAGGCAAAGCTATCAATTACTTGACCCCTCCCAGAATCTTACTTGCTTTGGTCACCGCTTGGTTACGGCGAGGTCGCTGGTTTGATGATCAGGGAAGAGCATTATATGCAGCTGAAGCAGACCGACTTCGTAATTGGGCTGAAGATCGAGCCCGATTTTCTTTCACCGATGCAATGGAAATGTACACAGAGAACACCTGGTTATCTGTCTTCTCACTTTCAGTTGTCTGTGCCTTCATAATTCTTTCCAGCACAGGCAGCAATTTGCCTGGAACATGA

>Glyma07g09430.2   sequence type=CDS   gene model=Glyma07g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACAGTTGTGAAGCTACATGTTGTCCCAGAATGTTTGAACCAACAGAAAACGAGGTCGCTCAGGAGGGGATTTGGCTCATGCCCTTCACCTGGGGTGCTTGGTTTTGGCCATTATTGTGATCGGTTCTCTGTGAAAGTGTGCCGGGCTTTTAGGACTGAGGATGGTGGGGATGTAAAGGAGAAAAAGTTACGAAATTTGAAGAAAAATGAAGAGAAAACCAAAAGGGAAAGTGGGTTTTGGAGTTCCCTCAAGTCTATCTTGTTGAGGAATTTCATGGTGGGTTCAAAATCAGATGATGAGTATCGCCAAGCTGTGGCGAAGGTGGAGGGTCTCCTATCCTCGATCGCCATTCAAATTGGAAGATATATTGTGACTATGATGAGCACTGGGGTCATCCTTTCAATTGGATTTCAGATGTCAGGTGGAGACAGTCAGATGGATGCATTAATATGGTATAGTTGGCTAGGAGGAGTAATCATTGGGACAATGATAGGTGCTAACATGGTGTTGGAGGAACATTGTCGTGCCGGCCCACGTAATGTTGTCATAACGGGGAGTACAAGGGGATTGGGTAAAGCCTTAGCTCGGGAGTTTCTTCTTTCTGGAGATCGTGTGATTGTTACCTCTCGCAGCCCCGAGTCTGTGCAAGCAACTATCAAAGAGCTTGAGGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGCTCTTCTCTGACAAAGCTTTCACATGCAAAAGTTGTAGGCATTGCTTGTGATGTTTGTGAACCTCATGATGTGCAGAGACTGGCTAACTTCGCTGTCAAAGAACTTGGTCATATTGACATTTGGATAAACAATGCCGGAACAAATAAAGGTTTTAGACCATTGCTTCAGTTTAGTGACGAAGATATTAAACAGATTGTCTCAACAAATTTGGTTGGATCTATCCTCTGCACTCGAGAAGCCATGCGTGTTATGAGAAACCAAGCCATTGCAGGTCACATATTTAATATGGATGGTGCAGGTTCTGGAGGCTCTAGCACACCTTTGACTGCTGTATATGGTTCTACAAAGTGTGGCCTTAGGCAACTTCAAGGATCACTATTAAAGGAGTGCAAGCGATCCAAAGTAGGTGTCCATACTGCATCTCCAGGCATGGTTCTTACAGATCTGCTTTTAAGGGAAGAGCATTATATGCAGCTGAAGCAGACCGACTTCGTAATTGGGCTGAAGATCGAGCCCGATTTTCTTTCACCGATGCAATGGAAATGTACACAGAGAACACCTGGTTATCTGTCTTCTCACTTTCAGTTGTCTGTGCCTTCATAA

Predicted protein sequences of Glyma07g09430

Limit To All Plant Sequences

>Glyma07g09430.1   sequence type=predicted peptide   gene model=Glyma07g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVVKLHVVPECLNQQKTRSLRRGFGSCPSPGVLGFGHYCDRFSVKVCRAFRTEDGGDVKEKKLRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKSDDEYRQAVAKVEGLLSSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATIKELEENLKEGIANAVGSSLTKLSHAKVVGIACDVCEPHDVQRLANFAVKELGHIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQAIAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAEDRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTGSNLPGT*

>Glyma07g09430.2   sequence type=predicted peptide   gene model=Glyma07g09430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVVKLHVVPECLNQQKTRSLRRGFGSCPSPGVLGFGHYCDRFSVKVCRAFRTEDGGDVKEKKLRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKSDDEYRQAVAKVEGLLSSIAIQIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATIKELEENLKEGIANAVGSSLTKLSHAKVVGIACDVCEPHDVQRLANFAVKELGHIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRVMRNQAIAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQGSLLKECKRSKVGVHTASPGMVLTDLLLREEHYMQLKQTDFVIGLKIEPDFLSPMQWKCTQRTPGYLSSHFQLSVPS*

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