SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19660 | AT | Annotation by Michelle Graham. TAIR10: SITE-1 protease | chr5:6642118-6646418 REVERSE LENGTH=1038 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0004175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity | SoyBase | N/A | ISS |
| GO:0004252 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG4266 | KOG | Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily | JGI | ISS | |
| PTHR10795 | Panther | SUBTILISIN/KEXIN-RELATED SERINE PROTEASE | JGI | ISS | |
| PTHR10795:SF30 | Panther | SUBTILISIN-RELATED | JGI | ISS | |
| PF00082 | PFAM | Subtilase family | JGI | ISS | |
| UniRef100_G7KPW9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane-bound transcription factor site-1 protease n=2 Tax=Medicago truncatula RepID=G7KPW9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KIQ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIQ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g09410 not represented in the dataset |
Glyma07g09410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g32400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g085500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g09410.1 sequence type=CDS gene model=Glyma07g09410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCACCACCACCCAATGGAGTTCCATTTCTTTCTCTCTCCTCCTTCTCTCCATTGCCCTCTTCCAAACCCTAACCCCCAATTCCCCTCCGCCGCCCCCTCCTCCCAACTACATCGTCGCTTTCCGCCACTACGCCGCCGCCGATAGCCACCGCGCCTACCTTGAATCCGCCCTCCGCCCAGAGGGCTGGCGGTGGATCCCACGGCGGAACCCTGCGGCGCAGTTTCCCACCGATTTCGGGCTGGTCGCGATCGAGGATTTGGGAGTAGTTGACGAGATTCAGAAACTGGGGTCGGTCAAGTACGTGAGCTTGGACATGAGCTACAAGAGGGGTTTGATGACGAAGAAGGATCAGAGACGCAACGACAACAAGGTTGGTGCGTTTGAGGATGGGAAGAAGAAGCGCCCCGGGAAGATCTTCACTGCGATGTCGTTTTCTGAGGCTGAAGAAGAAGACGCCAGCAATCGCAGCAGTTCCGTCAAATGGGGGCGGGAATTGTTGATGCAGAGATCACAAGTTACTTCAATGTTTGGGGCTGGGGATCTTTGGGCAAAAGGGTACACTGGTGCCAAGGTCAAAATGGCCATATTTGACACAGGAATTCGAGCGGATCACCCTCATTTTCGTAACATCAAGGAGCGCACAAATTGGACAAATGAAGATACGTTGAATGATAATCTTGGACATGGGACTTTTGTTGCGGGAGTTATTGCTGGTGTAGATGCTGAATGCCTTGGTTTTGCACCAGATACAGAGATATATGCATTTCGTGTGTTCACTGATGCACAGGTGTCATATACATCATGGTTCCTTGATGCCTTCAACTATGCAATTGCAACCAATATGGATGTGCTAAATTTGAGCATAGGAGGACCTGACTACTTGGATCTCCCATTTGTTGAAAAGATATGGGAGATAACAGCAAATAACATAATCATGGTTTCTGCAATTGGAAATGATGGGCCACTTTATGGAACTTTGAACAATCCAGCAGATCAAAGTGATGTCATCGGTGTTGGTGGTATTGACTATAGTGACCATATAGCCTCCTTTTCCTCACGTGGCATGAGTACCTGGGAGCTTCCTCATGGTTATGGCCGCGTGAAGCCAGACATAGTTGCATATGGACGGGACATAATGGGATCAAAAATTAGTGCGGGTTGTAAAAGTTTATCAGGAACTAGTGTTGCAAGTCCTGTAGTTGCTGGTGTTGTATGTTTGCTTGTCAGTGTCATTCCTGAACCTGATAGAAAAAATATCTTAAACCCAGCAAGCATGAAACAAGCATTGGTTGAGGGTGCTGCAAAGCTTTCTGGGCCTAACATGTATGAGCAGGGTGCTGGCAGAGTTGATCTGTTAGAATCATATGAGATTCTTAAGAGCTACAAACCTAGGGCAAGCATCTTTCCCAGTTTTCTTGATTATACAGATTGTCCTTACTCATGGCCCTTCTGTCGTCAGCCACTCTATGCAGGTGCCATGCCTGTCATCTTCAATGCCACCATTTTGAATGGAATGGGTGTTGTCGGATATGTTGATAGTACACCAACATGGCATCCTTCTGATGAAGAAGGAAATCTTCTAAACATACATTTTACTTATTCTGAGATCATCTGGCCTTGGACTGGTTATTTGGCCATTCACATGCAAATCAAGGAAGAAGGTGCACAGTTTTCCGGAAAGATTGAAGGTAATGTGACTCTCAGGGTTTCTAGCCCCCCGGCTCAAGGAGAGAAGGGCCCTCGAATTAGCATATGTGTGCTTCAATTAAAGTTAAATGTGGTGCCAACACCACCACGGTCAAAACGGATTTTGTGGGATCAGTTTCACAATATCAAATACCCACCTGGTTATATTCCCAGAGATTCCTTGGATGTTCGTAATGACATTCTTGACTGGCATGGGGATCATCTGCATACAAATTTTCACATCATGTTCAACATGTTACGAGATGCTGGTTACTATGTTGAATCACTTGGTTCTCCTCTTACATGCTTTGATGCTCGATTGTATGGAACACTTCTGTTGGTGGATCTTGAGGATGAGTACTTTGCTGAGGAGATTGAAAAGCTGAGAGATGATGTTGTAAATACTGGATTGGGATTAGCTGTCTTTTCTGAATGGTATAATGTAGATACCATGGTAAAGATGAGATTCTTTGATGACAATACACGGAGCTGGTGGACCCCAGTCACTGGAGGTGCTAATGTTCCTGCACTGAATGATCTTTTGGCTCCATTTGGGATTGCTTTTGGAGATAAGATTCTGAATGGTGATTTTTCACTTTTGGGTGAGCAGAATCGTTATGCTTCTGGAACAGATATAGTGAGGTTTCCAAGGGGTGGCTATGTACATAGCTTTCCTTTCTTAGATAGTTCAGAAAGTGGAGCCACACAGAATGTGCTGCAAACTTCTGGCTCAACCAAGGCAGATTCTCCAATTCTTGGTCTCACAGTGATGGGTGAAGGTCGCATAGCTGTGTATGGGGACTCCAATTGTTTGGACAGCAGCCATATGGTTACTAATTGTTTTACCCTTCTGAGGAAAATACTAGATTTTACTAATGAAGACGTTAGAGATCCAGAACTTTTCTCTGACTCAAATAAACAAGATTCTCCTTTGTATGAAGCTGACAATCAGTTGCCCTCACGCAGAACTGATGTAAATTTCTCTGCATATTCAGCTATCGTGGGGAAGGAATTGATCTGCAGGACTGACACAAGGCTTGAAATCTGGGGAACTAAGGGCTACAGTTTGCAAGTCAGAGGAAGAAACAGAAGATTGCCCGGATATCCTGTCATTGATTTGGGGAGGGGTTTAAATTCAACCTCTGATGCTTCCAACATTTGGCGTCCTAGGTTGACTGTGAGAAGTAATAAGGATGATTCTCTGGGGAACAGGTATTTAGGCCTGTTCTATGGGGATGAGCCTGATGCACCTATGCTGGTTGGTGGTCACTGGCTGGTTCCTGTTGTTGTTGCAGTAACTGGTATTTTGCTATTGAGTTTTTGGCGCATTCGCCAAAAGAGGCGTAGACGAAGGAAAGGATCAAGTTCTGGTAGATTGGCCAATATATAG
>Glyma07g09410.1 sequence type=predicted peptide gene model=Glyma07g09410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATTTTQWSSISFSLLLLSIALFQTLTPNSPPPPPPPNYIVAFRHYAAADSHRAYLESALRPEGWRWIPRRNPAAQFPTDFGLVAIEDLGVVDEIQKLGSVKYVSLDMSYKRGLMTKKDQRRNDNKVGAFEDGKKKRPGKIFTAMSFSEAEEEDASNRSSSVKWGRELLMQRSQVTSMFGAGDLWAKGYTGAKVKMAIFDTGIRADHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVIAGVDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNMDVLNLSIGGPDYLDLPFVEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYSDHIASFSSRGMSTWELPHGYGRVKPDIVAYGRDIMGSKISAGCKSLSGTSVASPVVAGVVCLLVSVIPEPDRKNILNPASMKQALVEGAAKLSGPNMYEQGAGRVDLLESYEILKSYKPRASIFPSFLDYTDCPYSWPFCRQPLYAGAMPVIFNATILNGMGVVGYVDSTPTWHPSDEEGNLLNIHFTYSEIIWPWTGYLAIHMQIKEEGAQFSGKIEGNVTLRVSSPPAQGEKGPRISICVLQLKLNVVPTPPRSKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDAGYYVESLGSPLTCFDARLYGTLLLVDLEDEYFAEEIEKLRDDVVNTGLGLAVFSEWYNVDTMVKMRFFDDNTRSWWTPVTGGANVPALNDLLAPFGIAFGDKILNGDFSLLGEQNRYASGTDIVRFPRGGYVHSFPFLDSSESGATQNVLQTSGSTKADSPILGLTVMGEGRIAVYGDSNCLDSSHMVTNCFTLLRKILDFTNEDVRDPELFSDSNKQDSPLYEADNQLPSRRTDVNFSAYSAIVGKELICRTDTRLEIWGTKGYSLQVRGRNRRLPGYPVIDLGRGLNSTSDASNIWRPRLTVRSNKDDSLGNRYLGLFYGDEPDAPMLVGGHWLVPVVVAVTGILLLSFWRIRQKRRRRRKGSSSGRLANI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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