SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G24620 | AT | Annotation by Michelle Graham. TAIR10: RHO guanyl-nucleotide exchange factor 8 | chr3:8980695-8982793 REVERSE LENGTH=523 | SoyBase | E_val: 0 | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0048610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction | SoyBase | N/A | ISS |
| GO:0048868 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube development | SoyBase | N/A | ISS |
| GO:0005085 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Rho guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0042802 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: identical protein binding | SoyBase | N/A | ISS |
| PF03759 | PFAM | PRONE (Plant-specific Rop nucleotide exchanger) | JGI | ISS | |
| UniRef100_F6LPV1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RopGEF8 n=1 Tax=Medicago truncatula RepID=F6LPV1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023384D5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023384D5 related cluster n=1 Tax=unknown RepID=UPI00023384D5 | SoyBase | E_val: 0 | ISS |
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Glyma07g09330 not represented in the dataset |
Glyma07g09330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g32450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g085000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g09330.1 sequence type=CDS gene model=Glyma07g09330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCGAGCTTTTCATCGCCAAATTAGCATGCAGAAGTCTAAGTCTTTTCATTTCAGGAAGATGTTTGAGATCCCAGGGAAACATATCCACGGTTTATTTGATAAAGATCATGATGAAGCAGGTGAAAGTGATAGTAAGATTTACTCAAAAAGCTTTGAGTCTAGAAGCTCACTTGATCAGCAATTTGAAATTCAGCTCAATAGTGATCATAGTCCAGCAGCAAGCTTGGGTATTGAAGCACCTAGAATGCCTCCCAAGCCACCAACTGAAGCTGACTTGATGAAGGAAAGGTTTGCTAAGCTGCTTTTAGGAGAAGACATGTCTGGTGCAGGGAATGGTGTTTCTTCAGCATTGGCTTTGTCAAATGCCATAACAAACCTGGCTGCATCTGTTTTCGGAGAACAATCAAAGCTGGAGCCAATGTCCTCAGAAAGAAAGGCCAGGTGGAGAAAAGAAATTGAGTGGCTTCTATCTGTAACTGATTATATTGTTGAATTTGCTCCATCACAACAGATAGCTAAGGATGGAACAAGCATGGAGATCATGACTACACGGCAACGAACTGATCTGCTCATGAACATCCCCGCCTTGCGAAAGCTTGATGCAATGCTCATTGACACGTTAGACAACTTTAGAGATCAAAATGAGTTCTGGTATGTCTCTAAAAATGATGAGAATTCTGAGGATAACACTAACAGCCAAAGGAAGAGTGACAAATGGTGGCTACCAACAGTTAAAGTTCCCCCAACAGGGATGTCAGAACCGGCCGGAAAATGGATACAGTTCCAGAAGGACAATGTCAACCAAGTGCTTAAAGCAGCCATGGCAATAAATGCTCAAATACTATCAGAAATGGAGATCCCTGAAAATTACATTGAATCTCTCCCCAAGAATGGTAGAGAAAGCCTTGGTGAATCAGTCTATAAGAGCATTACAGTGGAATACTTTGATCCTGGGCAATTTCTCTCAACAATGGACATGTCCACAGAGCATAAGGTGCTTGACCTCAAGAATAGGATTGAAGCTTCCATAGTGATATGGAGAAGGAAGATGACCAATAAGGATAGTAAGTCTGCGTGGAGTTCGGCAGTGAGCATTGAGAAGAGGGAACTCTTTGAGGAGAGAGCTGAGACAATATTGCTGATGCTCAAACATCAGTTCCCAGGACTTCCACAATCTTCACTTGACATTAGCAAAATCCAATACAACAAGGATGTTGGACAAGCTATTCTAGAGAGCTACTCAAGAGTAATAGAAAGCCTGGCTTACACAGTTATGTCAAGGATTGATGATGTCTTGTACGCTGATTCGGTGACAAAGAACCCTTCATTGGCAGTGAGCAGCAGAAGATATTCATTGGATTCTTCACCGGCGGCAACTGAGCAGACGTCCCCAAACTCTGAGGATGAGAATAGCTACTTACAATCTTCAGAGACACCTCCTTCAATGACTCTCTCAGATTTCATGGGTTGGAGTTCTACCAAGGGGGGGAGTGACATAAAGAATACTAATTCCACAAGAGACATAGAAGATACTAATTCCACAGGAGACATAGAAGAGTACGTGAAAGAAAAAGATGAAAAGAGTATAACTAAATCTCCAAAACTTACAACCCCATCGAAATCTTACTATTTGGAGAAGCTTGAGTACTTGAATGCTTTAAAAAGTCCCATAGCTCGACATTAA
>Glyma07g09330.1 sequence type=predicted peptide gene model=Glyma07g09330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVRAFHRQISMQKSKSFHFRKMFEIPGKHIHGLFDKDHDEAGESDSKIYSKSFESRSSLDQQFEIQLNSDHSPAASLGIEAPRMPPKPPTEADLMKERFAKLLLGEDMSGAGNGVSSALALSNAITNLAASVFGEQSKLEPMSSERKARWRKEIEWLLSVTDYIVEFAPSQQIAKDGTSMEIMTTRQRTDLLMNIPALRKLDAMLIDTLDNFRDQNEFWYVSKNDENSEDNTNSQRKSDKWWLPTVKVPPTGMSEPAGKWIQFQKDNVNQVLKAAMAINAQILSEMEIPENYIESLPKNGRESLGESVYKSITVEYFDPGQFLSTMDMSTEHKVLDLKNRIEASIVIWRRKMTNKDSKSAWSSAVSIEKRELFEERAETILLMLKHQFPGLPQSSLDISKIQYNKDVGQAILESYSRVIESLAYTVMSRIDDVLYADSVTKNPSLAVSSRRYSLDSSPAATEQTSPNSEDENSYLQSSETPPSMTLSDFMGWSSTKGGSDIKNTNSTRDIEDTNSTGDIEEYVKEKDEKSITKSPKLTTPSKSYYLEKLEYLNALKSPIARH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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