Glyma07g09230 - SoyBase

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Report for Sequence Feature Glyma07g09230

Feature Type:	gene_model
Chromosome:	Gm07
Start:	7708727
stop:	7710813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g09230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22320	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic rpb5 RNA polymerase subunit family protein \| chr3:7891045-7892094 REVERSE LENGTH=205	SoyBase	E_val: 1.00E-119	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0000418	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase IV complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005665	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
KOG3218	KOG	RNA polymerase, 25-kDa subunit (common to polymerases I, II and III)	JGI		ISS
PTHR10535	Panther	DNA-DIRECTED RNA POLYMERASE II	JGI		ISS
PF01191	PFAM	RNA polymerase Rpb5, C-terminal domain	JGI		ISS
PF03871	PFAM	RNA polymerase Rpb5, N-terminal domain	JGI		ISS
UniRef100_C6SVA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVA4_SOYBN	SoyBase	E_val: 3.00E-149	ISS
UniRef100_G7K102	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Medicago truncatula RepID=G7K102_MEDTR	SoyBase	E_val: 1.00E-129	ISS

Expression Patterns of Glyma07g09230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g09230 not represented in the dataset	Glyma07g09230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09230

Paralog	Evidence	Comments
Glyma09g32550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g084000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g09230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g09230

Limit To All Plant Sequences

>Glyma07g09230.1   sequence type=CDS   gene model=Glyma07g09230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTTTCGGAGGAGGAAATGGGTCGTCTGTACCGAATAAGGAAGACGGTGATGCAAATGCTTCGGGACAGGGGTTTTCTGGTGGGTGACTTCGAGATCAACATGTCGAAGCATGAGTTCAAGTCCAAGTACGGCGAGCACATGAAGCGCGAGGACCTGGTCATCAACAAGTCCAAGAAGGACAACTCCGGCGACCAGATCTACGTCTTCTTCCCCGACGAGCCCAAGGTCGGCGTCAAGACCATGAAGACCTACACCAACCGCATGAACTCCGAAAACGTCTATAGAGCCATCCTCGTCACCCAGACCAACCTCACCCCCTTCGCCCGCACCTGCATCAGCGAAATCTCCTCCAAATTCCACCTCGAGGTCTTTCAGGAGGCCGAACTTCTCGTTAACATTAAAGAGCATGAGCTTGTCCCCGAACATCAGGTTCTCACTGACGCCGAGAAGAAAACCTTGCTTGAGAGATACACTGTCAAGGAAACTCAGCTACCTAGGATTCAGGTCACAGATCCTGTTGCAAGATATTATGGATTGAAGCGTGGACAAGTTGTCAAGATTATCCGGCCAAGTGAAACTGCTGGCAGATATGTGACATACCGATTTGTTGTATAA

Predicted protein sequences of Glyma07g09230

Limit To All Plant Sequences

>Glyma07g09230.1   sequence type=predicted peptide   gene model=Glyma07g09230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSKFHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTVKETQLPRIQVTDPVARYYGLKRGQVVKIIRPSETAGRYVTYRFVV*

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