Glyma07g09131 - SoyBase

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Report for Sequence Feature Glyma07g09131

Feature Type:	gene_model
Chromosome:	Gm07
Start:	7609822
stop:	7613194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g09131

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45540	AT	Annotation by Michelle Graham. TAIR10: WD-40 repeat family protein / beige-related \| chr2:18757881-18772229 REVERSE LENGTH=2946	SoyBase	E_val: 6.00E-54	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
PTHR13743	Panther	BEIGE/BEACH-RELATED	JGI		ISS
PTHR13743:SF58	Panther		JGI		ISS
UniRef100_G7L1D4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neurobeachin-like protein n=1 Tax=Medicago truncatula RepID=G7L1D4_MEDTR	SoyBase	E_val: 2.00E-59	ISS
UniRef100_UPI0002338DBA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338DBA related cluster n=1 Tax=unknown RepID=UPI0002338DBA	SoyBase	E_val: 3.00E-117	ISS

Expression Patterns of Glyma07g09131

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g09131 not represented in the dataset	Glyma07g09131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g09131

Paralog	Evidence	Comments
Glyma03g02451	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g09131 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g083100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g09131

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g09131

Limit To All Plant Sequences

>Glyma07g09131.2   sequence type=transcript   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGATCAATATATCTTCTCCCCTTCCTCCCTGGCAGCGGAAAGAGTAAAAATATTGTACCTGGCTTAGATGCTACCAAGTCAGAAAGAAAGCCCTATTTATCCATTTTAAGTACTTCTGATTATTATTGTTCATTTGTGTCTTACATTACTCATTTGTTTTCAAACCTGTGATAAAATTTGATGCTTCCTCAACTATTATAGATGATCAGAGCATGTGATTATAATGATAATGCAATATGTTTCTTTGTATATCAGACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGTATGTCAGGTATTGAAGCTTTTTATTCAGAATCAGAAGAAACTCACCATAGCAACAAAATAAAAATGCTCCATCACCATCAAGTTGCTTCCTGGATTTGCACACTTTGGAGGTATTTCATGTATTGAAGCTGAAAGAAGGACAAGATATCACTGCTCTTGCTCTATATAAGGATAACACAAATCTTTTGGTTTCAACTTGGGATAAGCAATTGATTATCTTTACTGATCCGGCTGTAAGTTAAATCTCTTGATAAGGATCATTGTCAAATAGCAACCATTGCTTACGCCTTACGAGTGAATACTGTTTTTAAATATTCAGTAGTGTGTCCCGGGAGTGATTTTTTTTCTTTTTCTGATGCTTGTGAATTGGCTAAAAGGACAAACTCTGATATTTCACTTACAATCTAGTTTCATACAAGAATAATCACAGTTGCACATTATTTGGAGTCTCACAATTTACACTTGTGCAGTCCGGTAGATTTTGATATTTTTATGTGCCTGTTGGACCGAATGCTCAAATAATATTTTA

>Glyma07g09131.3   sequence type=transcript   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGAGTAAAAATATTGTACCTGGCTTAGATGCTACCAAGTCAGAAAGAAAGCCCTATTTATCCATTTTAAGTACTTCTGATTATTATTGTTCATTTGTGTCTTACATTACTCATTTGTTTTCAAACCTGTGATAAAATTTGATGCTTCCTCAACTATTATAGATGATCAGAGCATGTGATTATAATGATAATGCAATATGTTTCTTTGTATATCAGACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGGTATTTCATGTATTGAAGCTGAAAGAAGGACAAGATATCACTGCTCTTGCTCTATATAAGGATAACACAAATCTTTTGGTTTCAACTTGGGATAAGCAATTGATTATCTTTACTGATCCGGCTGTAAGTTAAATCTCTTGATAAGGATCATTGTCAAATAGCAACCATTGCTTACGCCTTACGAGTGAATACTGTTTTTAAATATTCAGTAGTGTGTCCCGGGAGTGATTTTTTTTCTTTTTCTGATGCTTGTGAATTGGCTAAAAGGACAAACTCTGATATTTCACTTACAATCTAGTTTCATACAAGAATAATCACAGTTGCACATTATTTGGAGTCTCACAATTTACACTTGTGCAGTCCGGTAGATTTTGATATTTTTATGTGCCTGTTGGACCGAATGCTCAAATAATATTTTA

>Glyma07g09131.4   sequence type=transcript   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAATATAAATTGTTACCAAATTTAATGTTATTACCTATATTAACTAATTTTCTTAAAGAGTATTTGAGATCAATATATCTTCTCCCCTTCCTCCCTGGCAGCGGAAAGAGTAAAAATATTGTACCTGGCTTAGATGCTACCAAGTCAGAAAGAAAGCCCTATTTATCCATTTTAAACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGTATGTCAGGTATTGAAGCTTTTTATTCAGAATCAGAAGAAACTCACCATAGCAACAAAATAAAAATGCTCCATCACCATCAAGTTGCTTCCTGGATTTGCACACTTTGGAGGTATTTCATGTATTGAAGCTGAAAGAAGGACAAGATATCACTGCTCTTGCTCTATATAAGGATAACACAAATCTTTTGGTTTCAACTTGGGATAAGCAATTGATTATCTTTACTGATCCGGCTGTAAGTTAAATCTCTTGATAAGGATCATTGTCAAATAGCAACCATTGCTTACGCCTTACGAGTGAATACTGTTTTTAAATATTCAGTAGTGTGTCCCGGGAGTGATTTTTTTTCTTTTTCTGATGCTTGTGAATTGGCTAAAAGGACAAACTCTGATATTTCACTTACAATCTAGTTTCATACAAGAATAATCACAGTTGCACATTATTTGGAGTCTCACAATTTACACTTGTGCAGTCCGGTAGATTTTGATATTTTTATGTGCCTGTTGGACCGAATGCTCAAATAATATTTTA

>Glyma07g09131.5   sequence type=transcript   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAATATAAATTGTTACCAAATTTAATGTTATTACCTATATTAACTAATTTTCTTAAAGAGTATTTGAGATCAATATATCTTCTCCCCTTCCTCCCTGGCAGCGGAAAGAGTAAAAATATTGTACCTGGCTTAGATGCTACCAAGTCAGAAAGAAAGCCCTATTTATCCATTTTAAACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGGTATTTCATGTATTGAAGCTGAAAGAAGGACAAGATATCACTGCTCTTGCTCTATATAAGGATAACACAAATCTTTTGGTTTCAACTTGGGATAAGCAATTGATTATCTTTACTGATCCGGCTGTAAGTTAAATCTCTTGATAAGGATCATTGTCAAATAGCAACCATTGCTTACGCCTTACGAGTGAATACTGTTTTTAAATATTCAGTAGTGTGTCCCGGGAGTGATTTTTTTTCTTTTTCTGATGCTTGTGAATTGGCTAAAAGGACAAACTCTGATATTTCACTTACAATCTAGTTTCATACAAGAATAATCACAGTTGCACATTATTTGGAGTCTCACAATTTACACTTGTGCAGTCCGGTAGATTTTGATATTTTTATGTGCCTGTTGGACCGAATGCTCAAATAATATTTTA

Coding sequences of Glyma07g09131

Limit To All Plant Sequences

>Glyma07g09131.1   sequence type=CDS   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGAGCATGTGATTATAATGATAATGCAATATGTTTCTTTGTATATCAGACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGGTATTGAAGCTTTTTATTCAGAATCAGAAGAAACTCACCATAGCAACAAAATAAAAATGCTCCATCACCATCAAGTTGCTTCCTGGATTTGCACACTTTGGAGGTATTTCATGTATTGA

>Glyma07g09131.2   sequence type=CDS   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGAGCATGTGATTATAATGATAATGCAATATGTTTCTTTGTATATCAGACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGTATGTCAGGTATTGAAGCTTTTTATTCAGAATCAGAAGAAACTCACCATAGCAACAAAATAA

>Glyma07g09131.3   sequence type=CDS   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCAGAGCATGTGATTATAATGATAATGCAATATGTTTCTTTGTATATCAGACAATATTCCGCAACCCAAAAGCAATCAAACCATATGCTGTTCCATCCCCTGAGCACTGCAATCTACCAGCGGCTGCTATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGGTATTTCATGTATTGAAGCTGAAAGAAGGACAAGATATCACTGCTCTTGCTCTATATAA

>Glyma07g09131.4   sequence type=CDS   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGTATGTCAGGTATTGAAGCTTTTTATTCAGAATCAGAAGAAACTCACCATAGCAACAAAATAA

>Glyma07g09131.5   sequence type=CDS   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATACATCTTCACATATGGTTGAGGTTGTTGGTTTGAATGCACCAGCAGCTCAGGTTGCACAGCACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACACCATTTTTCTTTCAACATGGAAAAGCTACATCAGGCTCTGTGGGTGGGAATCTTACACGCACGTTCAAAGGTCCTGCTGGAACTGGCGAAGAGTGGCAATATCCCCAAGCATTGGCTTTTTCTGTTTCTGGAATTAGAAGCCAAGCTATTGTTTCTATAACATGTGACAAAGAAATTATAACTGGTATTTCATGTATTGAAGCTGAAAGAAGGACAAGATATCACTGCTCTTGCTCTATATAA

Predicted protein sequences of Glyma07g09131

Limit To All Plant Sequences

>Glyma07g09131.1   sequence type=predicted peptide   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRACDYNDNAICFFVYQTIFRNPKAIKPYAVPSPEHCNLPAAAMHTSSHMVEVVGLNAPAAQVAQHKWQPNTPDGQGTPFFFQHGKATSGSVGGNLTRTFKGPAGTGEEWQYPQALAFSVSGIRSQAIVSITCDKEIITGIEAFYSESEETHHSNKIKMLHHHQVASWICTLWRYFMY*

>Glyma07g09131.2   sequence type=predicted peptide   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRACDYNDNAICFFVYQTIFRNPKAIKPYAVPSPEHCNLPAAAMHTSSHMVEVVGLNAPAAQVAQHKWQPNTPDGQGTPFFFQHGKATSGSVGGNLTRTFKGPAGTGEEWQYPQALAFSVSGIRSQAIVSITCDKEIITVCQVLKLFIQNQKKLTIATK*

>Glyma07g09131.3   sequence type=predicted peptide   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIRACDYNDNAICFFVYQTIFRNPKAIKPYAVPSPEHCNLPAAAMHTSSHMVEVVGLNAPAAQVAQHKWQPNTPDGQGTPFFFQHGKATSGSVGGNLTRTFKGPAGTGEEWQYPQALAFSVSGIRSQAIVSITCDKEIITGISCIEAERRTRYHCSCSI*

>Glyma07g09131.4   sequence type=predicted peptide   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHTSSHMVEVVGLNAPAAQVAQHKWQPNTPDGQGTPFFFQHGKATSGSVGGNLTRTFKGPAGTGEEWQYPQALAFSVSGIRSQAIVSITCDKEIITVCQVLKLFIQNQKKLTIATK*

>Glyma07g09131.5   sequence type=predicted peptide   gene model=Glyma07g09131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHTSSHMVEVVGLNAPAAQVAQHKWQPNTPDGQGTPFFFQHGKATSGSVGGNLTRTFKGPAGTGEEWQYPQALAFSVSGIRSQAIVSITCDKEIITGISCIEAERRTRYHCSCSI*

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