SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12650 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). | chr1:4306183-4307673 FORW | SoyBase | E_val: 2.00E-71 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0051604 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein maturation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3190 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21738 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF06102 | PFAM | Domain of unknown function (DUF947) | JGI | ISS | |
| UniRef100_B6T986 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Testis intracellular mediator protein n=2 Tax=Zea mays RepID=B6T986_MAIZE | SoyBase | E_val: 4.00E-76 | ISS |
| UniRef100_C6TDE9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TDE9_SOYBN | SoyBase | E_val: 6.00E-180 | ISS |
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Glyma07g09100 not represented in the dataset |
Glyma07g09100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g02400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g082900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g09100.2 sequence type=transcript gene model=Glyma07g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTGCGTCAAATCACAAACAACCCACCAATTATAAGTTGCCGTTTCCCTTCTCACTTGCTCGCGGAATTGGAGGAACCCTTCGCTTCCTGTCTCGCGGCATTGAACCCTGAACACATGACTCAGCAAAGAGACAGAGTCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCTTCTGCTTATAGTTCCTCAGAAGATGAAGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACATTTGAGGAGTTGCAGAAAGCTCGCTCGAATGGGACACATGCATTTTTCCAGAAACCCAAAGAAGACAAAAAATTAAAAAGGGCCAACAAGAATAGGCCAATGGAGGCTAGTAGCAAGAAGCCAGTTTCTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGCGGTAAACTTGACCCTGAAGGGTTTAGGAAGAGATATAATTTCTTGTATGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAAAAGGAATTGAAAAAATATAAAGACCCGAAGCGCATAAATGAAATAGAAGAACGTGTATCATGGATTGATAAACAATTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCCAAGCACAAAAAGAAAGAGAGAGAAGCAACAAAGCAGGGAAAACGTCCCTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTAAAGTCATCTGGCAAACTTGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAGGTTTTGTAGCTTTAAGATTCTTTCGTAGGCTACAATTATACTGGAACATAACACCAAAAAGAAAAATAGTTTATGCATTTGGTCTGCCATCTTTGGGGATTAAATGTTGAACCCTTTTTGATGACTATCATGGTATTTGTTCTGTGACTGACTTGTATTTATCTAATTCTTGAATATTTACTAATTGGGGTATGGAGAGGTGCCACTAGGCTATAAGGCAATCTTTTGATTC
>Glyma07g09100.1 sequence type=CDS gene model=Glyma07g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCAGAAGCAAAGAGACAGAGTCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCTTCTGCTTATAGTTCCTCAGAAGATGAAGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACATTTGAGGAGTTGCAGAAAGCTCGCTCGAATGGGACACATGCATTTTTCCAGAAACCCAAAGAAGACAAAAAATTAAAAAGGGCCAACAAGAATAGGCCAATGGAGGCTAGTAGCAAGAAGCCAGTTTCTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGCGGTAAACTTGACCCTGAAGGGTTTAGGAAGAGATATAATTTCTTGTATGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAAAAGGAATTGAAAAAATATAAAGACCCGAAGCGCATAAATGAAATAGAAGAACGTGTATCATGGATTGATAAACAATTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCCAAGCACAAAAAGAAAGAGAGAGAAGCAACAAAGCAGGGAAAACGTCCCTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTAAAGTCATCTGGCAAACTTGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAG >Glyma07g09100.2 sequence type=CDS gene model=Glyma07g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCAGCAAAGAGACAGAGTCCCAGATTCCATGGAAACCCAGTACGAGGAGAGTGAGAAAGACGAGTCTTCTTCTGCTTATAGTTCCTCAGAAGATGAAGAGGAGGAAGAGATAGAGAAGGAGCTGGCTGATGTAACATTTGAGGAGTTGCAGAAAGCTCGCTCGAATGGGACACATGCATTTTTCCAGAAACCCAAAGAAGACAAAAAATTAAAAAGGGCCAACAAGAATAGGCCAATGGAGGCTAGTAGCAAGAAGCCAGTTTCTGGGTTTAGAGAGGTCATCCAAGCTCCAAAGAAGGTTGTACGTGATCCACGATTTGAATCTCTTTGCGGTAAACTTGACCCTGAAGGGTTTAGGAAGAGATATAATTTCTTGTATGAAAATGATCTTCCTGCTGAAAGACAGGCTCTTAAAAAGGAATTGAAAAAATATAAAGACCCGAAGCGCATAAATGAAATAGAAGAACGTGTATCATGGATTGATAAACAATTGAAGTCTGATTCAGCGAAGCATATTGATGCAGAAATATTGGCCAAGCACAAAAAGAAAGAGAGAGAAGCAACAAAGCAGGGAAAACGTCCCTTTTATCTCAAGAAATCTGAAATACGGAAGCAAAGGCTTATTGAAAAATATAACCATCTAAAGTCATCTGGCAAACTTGAAGCATTTGTTGAGAAAAGGAGGAGGAGGAATGCTGCAAAGGACCATAGATACATGCCATATCGTAGATCTGGTGATGTGGAATAG
>Glyma07g09100.1 sequence type=predicted peptide gene model=Glyma07g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQKQRDRVPDSMETQYEESEKDESSSAYSSSEDEEEEEIEKELADVTFEELQKARSNGTHAFFQKPKEDKKLKRANKNRPMEASSKKPVSGFREVIQAPKKVVRDPRFESLCGKLDPEGFRKRYNFLYENDLPAERQALKKELKKYKDPKRINEIEERVSWIDKQLKSDSAKHIDAEILAKHKKKEREATKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKLEAFVEKRRRRNAAKDHRYMPYRRSGDVE* >Glyma07g09100.2 sequence type=predicted peptide gene model=Glyma07g09100 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTQQRDRVPDSMETQYEESEKDESSSAYSSSEDEEEEEIEKELADVTFEELQKARSNGTHAFFQKPKEDKKLKRANKNRPMEASSKKPVSGFREVIQAPKKVVRDPRFESLCGKLDPEGFRKRYNFLYENDLPAERQALKKELKKYKDPKRINEIEERVSWIDKQLKSDSAKHIDAEILAKHKKKEREATKQGKRPFYLKKSEIRKQRLIEKYNHLKSSGKLEAFVEKRRRRNAAKDHRYMPYRRSGDVE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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