Glyma07g08970 - SoyBase

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Report for Sequence Feature Glyma07g08970

Feature Type:	gene_model
Chromosome:	Gm07
Start:	7490543
stop:	7493524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g08970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G45630	AT	Annotation by Michelle Graham. TAIR10: D-isomer specific 2-hydroxyacid dehydrogenase family protein \| chr2:18796000-18797089 FORWARD LENGTH=338	SoyBase	E_val: 2.00E-97	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
GO:0048037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cofactor binding	SoyBase	N/A	ISS
GO:0051287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD binding	SoyBase	N/A	ISS
KOG0069	KOG	Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)	JGI		ISS
PTHR10996	Panther	2-HYDROXYACID DEHYDROGENASE	JGI		ISS
PTHR10996:SF15	Panther	2-HYDROXYACID DEHYDROGENASE-RELATED	JGI		ISS
PF00389	PFAM	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	JGI		ISS
PF02826	PFAM	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	JGI		ISS
UniRef100_E6NU30	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL05D22.11 protein n=1 Tax=Jatropha curcas RepID=E6NU30_9ROSI	SoyBase	E_val: 5.00E-113	ISS
UniRef100_I1KIK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIK9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g08970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g08970 not represented in the dataset	Glyma07g08970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g08970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g081900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g08970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g08970

Limit To All Plant Sequences

>Glyma07g08970.3   sequence type=transcript   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCTCCATTTCTCCTCCACACATGGTCGAGTTGGGACTCTAGTGGTGCTAAAGTCGAACTTAATCACTCTGTTTCTCTCGTTACCGTTCTCTATCTATGCCCATCTCTTCAGCTCCATGTCTGACCACAAGGTGTGATATGCATCTCAAAATTCTGATACTATTAGAATAAAATTGAAAGGAAGAATAAATATTTGGAGTGTTTGATGGTACCATTTTACTGGAACTCAATCATCAAAGGCAATGGCAAACAAACAGCACAACCACAATGATAACAACAAGGAGCTTCAACCACTCCTTGTGCTTGGTCCTCCTTTCATGTTCCCAACCTTTGAAGCTCAAAACCTTCACAACTACCGTTTCCTCAATGCCTTTTCCTCCCAAATCCCTCTCCACCAATTCCTCGCCGAGCAAAACGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTCGCCAGAAGATCTCCGCAGACGCCATCCGGCTCCTCCCATCACTCAGCCTCATTGTGACCACTAGTAATGGAACCCGCCACATAGACTTGGCTGAGTGCAGCTACCGTGGCATTCAGGTTGCCTCTATTCCAGGAGATCAATTAGCCGTGGATGTTGCTGACATGACTGTGGGGTTGTTGATTGATGTCATGTGGAACATTTCTGCAGCTGATCGACATCTTAGGAAATGGGGTCCTTCTAAGCCCTGCAATCTTTCTTCTGGTTCCAAGCTAGAAGGCAAGCGAGTAGGCATTGTTGGATTGGGAAAAATTGGCAGAGAAGTTGCTAAAAGGCTGGAGGCCTTCGGCTGCAGAATTATGTACAATTCAAGAAACCAGAAGCCATTTGTCTCGTACCCTTTTTACTCTAATGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTCTTGCTCATTAAATGAGCAAACAAGGCACATAGTCAAAAGGGAAGTGATGTTGGCATTGGGGAAAGAAGGAGTTATTGTGAATATTGGACGTGGAGATCTAATTGATGAAAAGGAATTGGTGAGATGTTTGATGGAAGGGGAGATAAAGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAAAGAGCTCTTTCCTTTGGATAATGTTGTCCTTTCACCTCATGCTGCTTCATTGACTTCACATCGTATATATGATGTTTGTGAACGTGTAGCAGAGTGTCTTGAAGCATTCTTTTCAAGTAAACTACCGGAGTACCCTGGTCTTGGATGACTAAATTCATCTTTAAGGGCATTTGTATGAGACTGAGTTATGATCTTCTTCTCTCTCTCTCCTTTATCTATATTTATTTCACAAGTAGTTAACCATGTTAAGAAGTAATTAAAATGTCTAATAAAAGTTAATTACTTGTGAATCAAAATTAATCATATTTATATATTTGGACATGGGATGTACATTTGAAAAATGTACAACTATCAATATTCTATTATCTATTACACTTATCACTTTTTCTTTTTTGTACCTTTTTTATTCTTTTATTCTCTTTATCTCTCTCCATTTTCCATCCCAATCCCACCCAAAAATGGGGTGATGAATATCAGGACTCCCTAAGCAAATGCGAGAGTGGAGTGATTTTATGTAATATAATTTACAAAATGTGGATTATTTAAATGTAAAATACAAAATTTGAATAGATTAAGT

>Glyma07g08970.4   sequence type=transcript   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCCTTTAAGTTAAATTATCCCATGATTCTCCATTTCTCCTCCACACATGGTCGAGTTGGGACTCTAGTGGTGCTAAAGTCGAACTTAATCACTCTGTTTCTCTCGTTACCGTTCTCTATCTATGCCCATCTCTTCAGAATAAAATTGAAAGGAAGAATAAATATTTGGAGTGTTTGATGGTACCATTTTACTGGAACTCAATCATCAAAGGCAATGGCAAACAAACAGCACAACCACAATGATAACAACAAGGAGCTTCAACCACTCCTTGTGCTTGGTCCTCCTTTCATGTTCCCAACCTTTGAAGCTCAAAACCTTCACAACTACCGTTTCCTCAATGCCTTTTCCTCCCAAATCCCTCTCCACCAATTCCTCGCCGAGCAAAACGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTCGCCAGAAGATCTCCGCAGACGCCATCCGGCTCCTCCCATCACTCAGCCTCATTGTGACCACTAGTAATGGAACCCGCCACATAGACTTGGCTGAGTGCAGCTACCGTGGCATTCAGGTTGCCTCTATTCCAGGAGATCAATTAGCCGTGGATGTTGCTGACATGACTGTGGGGTTGTTGATTGATGTCATGTGGAACATTTCTGCAGCTGATCGACATCTTAGGAAATGGGGTCCTTCTAAGCCCTGCAATCTTTCTTCTGGTTCCAAGCTAGAAGGCAAGCGAGTAGGCATTGTTGGATTGGGAAAAATTGGCAGAGAAGTTGCTAAAAGGCTGGAGGCCTTCGGCTGCAGAATTATGTACAATTCAAGAAACCAGAAGCCATTTGTCTCGTACCCTTTTTACTCTAATGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTCTTGCTCATTAAATGAGCAAACAAGGCACATAGTCAAAAGGGAAGTGATGTTGGCATTGGGGAAAGAAGGAGTTATTGTGAATATTGGACGTGGAGATCTAATTGATGAAAAGGAATTGGTGAGATGTTTGATGGAAGGGGAGATAAAGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAAAGAGCTCTTTCCTTTGGATAATGTTGTCCTTTCACCTCATGCTGCTTCATTGACTTCACATCGTATATATGATGTTTGTGAACGTGTAGCAGAGTGTCTTGAAGCATTCTTTTCAAGTAAACTACCGGAGTACCCTGGTCTTGGATGACTAAATTCATCTTTAAGGGCATTTGTATGAGACTGAGTTATGATCTTCTTCTCTCTCTCTCCTTTATCTATATTTATTTCACAAGTAGTTAACCATGTTAAGAAGTAATTAAAATGTCTAATAAAAGTTAATTACTTGTGAATCAAAATTAATCATATTTATATATTTGGACATGGGATGTACATTTGAAAAATGTACAACTATCAATATTCTATTATCTATTACACTTATCACTTTTTCTTTTTTGTACCTTTTTTATTCTTTTATTCTCTTTATCTCTCTCCATTTTCCATCCCAATCCCACCCAAAAATGGGGTGATGAATATCAGGACTCCCTAAGCAAATGCGAGAGTGGAGTGATTTTATGTAATATAATTTACAAAATGTGGATTATTTAAATGTAAAATACAAAATTTGAATAGATTAAGT

Coding sequences of Glyma07g08970

Limit To All Plant Sequences

>Glyma07g08970.2   sequence type=CDS   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACAAACAGCACAACCACAATGATAACAACAAGGAGCTTCAACCACTCCTTGTGCTTGGTCCTCCTTTCATGTTCCCAACCTTTGAAGCTCAAAACCTTCACAACTACCGTTTCCTCAATGCCTTTTCCTCCCAAATCCCTCTCCACCAATTCCTCGCCGAGCAAAACGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTCGCCAGAAGATCTCCGCAGACGCCATCCGGCTCCTCCCATCACTCAGCCTCATTGTGACCACTAGTAATGGAACCCGCCACATAGACTTGGCTGAGTGCAGCTACCGTGGCATTCAGGTTGCCTCTATTCCAGGAGATCAATTAGCCGTGGATGTTGCTGACATGACTGTGGGGTTGTTGATTGATGTCATGTGGAACATTTCTGCAGCTGATCGACATCTTAGGAAATGGGGTCCTTCTAAGCCCTGCAATCTTTCTTCTGGTTCCAAGCTAGAAGGCAAGCGAGTAGGCATTGTTGGATTGGGAAAAATTGGCAGAGAAGTTGCTAAAAGGCTGGAGGCCTTCGGCTGCAGAATTATGTACAATTCAAGAAACCAGAAGCCATTTGTCTCGTACCCTTTTTACTCTAATGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTCTTGCTCATTAAATGAGCAAACAAGGCACATAGTCAAAAGGGAAGTGATGTTGGCATTGGGGAAAGAAGGAGTTATTGTGAATATTGGACGTGGAGATCTAATTGATGAAAAGGAATTGGTGAGATGTTTGATGGAAGGGGAGATAAAGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAAAGAGCTCTTTCCTTTGGATAATGTTGTCCTTTCACCTCATGCTGCTTCATTGACTTCACATCGTATATATGATGTTTGTGAACGTGTAGCAGAGTGTCTTGAAGCATTCTTTTCAAGTAAACTACCGGAGTACCCTGGTCTTGGATGA

>Glyma07g08970.3   sequence type=CDS   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACAAACAGCACAACCACAATGATAACAACAAGGAGCTTCAACCACTCCTTGTGCTTGGTCCTCCTTTCATGTTCCCAACCTTTGAAGCTCAAAACCTTCACAACTACCGTTTCCTCAATGCCTTTTCCTCCCAAATCCCTCTCCACCAATTCCTCGCCGAGCAAAACGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTCGCCAGAAGATCTCCGCAGACGCCATCCGGCTCCTCCCATCACTCAGCCTCATTGTGACCACTAGTAATGGAACCCGCCACATAGACTTGGCTGAGTGCAGCTACCGTGGCATTCAGGTTGCCTCTATTCCAGGAGATCAATTAGCCGTGGATGTTGCTGACATGACTGTGGGGTTGTTGATTGATGTCATGTGGAACATTTCTGCAGCTGATCGACATCTTAGGAAATGGGGTCCTTCTAAGCCCTGCAATCTTTCTTCTGGTTCCAAGCTAGAAGGCAAGCGAGTAGGCATTGTTGGATTGGGAAAAATTGGCAGAGAAGTTGCTAAAAGGCTGGAGGCCTTCGGCTGCAGAATTATGTACAATTCAAGAAACCAGAAGCCATTTGTCTCGTACCCTTTTTACTCTAATGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTCTTGCTCATTAAATGAGCAAACAAGGCACATAGTCAAAAGGGAAGTGATGTTGGCATTGGGGAAAGAAGGAGTTATTGTGAATATTGGACGTGGAGATCTAATTGATGAAAAGGAATTGGTGAGATGTTTGATGGAAGGGGAGATAAAGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAAAGAGCTCTTTCCTTTGGATAATGTTGTCCTTTCACCTCATGCTGCTTCATTGACTTCACATCGTATATATGATGTTTGTGAACGTGTAGCAGAGTGTCTTGAAGCATTCTTTTCAAGTAAACTACCGGAGTACCCTGGTCTTGGATGA

>Glyma07g08970.4   sequence type=CDS   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAACAAACAGCACAACCACAATGATAACAACAAGGAGCTTCAACCACTCCTTGTGCTTGGTCCTCCTTTCATGTTCCCAACCTTTGAAGCTCAAAACCTTCACAACTACCGTTTCCTCAATGCCTTTTCCTCCCAAATCCCTCTCCACCAATTCCTCGCCGAGCAAAACGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTCGCCAGAAGATCTCCGCAGACGCCATCCGGCTCCTCCCATCACTCAGCCTCATTGTGACCACTAGTAATGGAACCCGCCACATAGACTTGGCTGAGTGCAGCTACCGTGGCATTCAGGTTGCCTCTATTCCAGGAGATCAATTAGCCGTGGATGTTGCTGACATGACTGTGGGGTTGTTGATTGATGTCATGTGGAACATTTCTGCAGCTGATCGACATCTTAGGAAATGGGGTCCTTCTAAGCCCTGCAATCTTTCTTCTGGTTCCAAGCTAGAAGGCAAGCGAGTAGGCATTGTTGGATTGGGAAAAATTGGCAGAGAAGTTGCTAAAAGGCTGGAGGCCTTCGGCTGCAGAATTATGTACAATTCAAGAAACCAGAAGCCATTTGTCTCGTACCCTTTTTACTCTAATGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTCTTGCTCATTAAATGAGCAAACAAGGCACATAGTCAAAAGGGAAGTGATGTTGGCATTGGGGAAAGAAGGAGTTATTGTGAATATTGGACGTGGAGATCTAATTGATGAAAAGGAATTGGTGAGATGTTTGATGGAAGGGGAGATAAAGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAAAGAGCTCTTTCCTTTGGATAATGTTGTCCTTTCACCTCATGCTGCTTCATTGACTTCACATCGTATATATGATGTTTGTGAACGTGTAGCAGAGTGTCTTGAAGCATTCTTTTCAAGTAAACTACCGGAGTACCCTGGTCTTGGATGA

Predicted protein sequences of Glyma07g08970

Limit To All Plant Sequences

>Glyma07g08970.2   sequence type=predicted peptide   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANKQHNHNDNNKELQPLLVLGPPFMFPTFEAQNLHNYRFLNAFSSQIPLHQFLAEQNVDPSSIQAILCSPRQKISADAIRLLPSLSLIVTTSNGTRHIDLAECSYRGIQVASIPGDQLAVDVADMTVGLLIDVMWNISAADRHLRKWGPSKPCNLSSGSKLEGKRVGIVGLGKIGREVAKRLEAFGCRIMYNSRNQKPFVSYPFYSNVVELAGNSDVLVLSCSLNEQTRHIVKREVMLALGKEGVIVNIGRGDLIDEKELVRCLMEGEIKGAGLDVFENEPNVPKELFPLDNVVLSPHAASLTSHRIYDVCERVAECLEAFFSSKLPEYPGLG*

>Glyma07g08970.3   sequence type=predicted peptide   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANKQHNHNDNNKELQPLLVLGPPFMFPTFEAQNLHNYRFLNAFSSQIPLHQFLAEQNVDPSSIQAILCSPRQKISADAIRLLPSLSLIVTTSNGTRHIDLAECSYRGIQVASIPGDQLAVDVADMTVGLLIDVMWNISAADRHLRKWGPSKPCNLSSGSKLEGKRVGIVGLGKIGREVAKRLEAFGCRIMYNSRNQKPFVSYPFYSNVVELAGNSDVLVLSCSLNEQTRHIVKREVMLALGKEGVIVNIGRGDLIDEKELVRCLMEGEIKGAGLDVFENEPNVPKELFPLDNVVLSPHAASLTSHRIYDVCERVAECLEAFFSSKLPEYPGLG*

>Glyma07g08970.4   sequence type=predicted peptide   gene model=Glyma07g08970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANKQHNHNDNNKELQPLLVLGPPFMFPTFEAQNLHNYRFLNAFSSQIPLHQFLAEQNVDPSSIQAILCSPRQKISADAIRLLPSLSLIVTTSNGTRHIDLAECSYRGIQVASIPGDQLAVDVADMTVGLLIDVMWNISAADRHLRKWGPSKPCNLSSGSKLEGKRVGIVGLGKIGREVAKRLEAFGCRIMYNSRNQKPFVSYPFYSNVVELAGNSDVLVLSCSLNEQTRHIVKREVMLALGKEGVIVNIGRGDLIDEKELVRCLMEGEIKGAGLDVFENEPNVPKELFPLDNVVLSPHAASLTSHRIYDVCERVAECLEAFFSSKLPEYPGLG*

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