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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G45630 | AT | Annotation by Michelle Graham. TAIR10: D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr2:18796000-18797089 FORWARD LENGTH=338 | SoyBase | E_val: 4.00E-102 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0048037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cofactor binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG0069 | KOG | Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) | JGI | ISS | |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE | JGI | ISS | |
| PTHR10996:SF15 | Panther | 2-HYDROXYACID DEHYDROGENASE-RELATED | JGI | ISS | |
| PF00389 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JGI | ISS | |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_E6NU30 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL05D22.11 protein n=1 Tax=Jatropha curcas RepID=E6NU30_9ROSI | SoyBase | E_val: 2.00E-114 | ISS |
| UniRef100_I1KIK8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KIK8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g08961 not represented in the dataset |
Glyma07g08961 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g02271 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g081800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g08961.2 sequence type=transcript gene model=Glyma07g08961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTTATGGAATGTAGTTTAAAAATTATTTTCATGATATTTCATAAATAAATTGGGAATATCTCAATCTTCCGTTTCTTTCACAATCAAACGCACATACATATCCTCTGTAATGTAGGGGTCAAACAATAGTTTATCTACAACGATGAACAGATCTAGTTTTTATATATTAATTCAGAACACATCTTTTTAATTGTTTATTATATATAATATATAATTTAAATTAAATTTACATCTCAATGATTCTCCTCCGCACTTGGTCGAGTTGGGAATGTTGTGATGCTAATTCAAACCCAATCACTCTCCTTCTCTCCCTACCTTTCTCCGTCTATGCCAATCTCTTCCGTACCAGTTTCCTGGATCTCAGTCAATAATGGCTATGGCAGAAAAACACAACCACATTGATAATAAGGAGATTCAACCACTCCTTGTGTTTGGTCCTCCATTAATCTTCCCAACTTTTGAAGCTCGAAACTTTCACAAATACCGATTCCTCAAAGCTTTCTCCTCACAACTCCCTCTCCACCAATTCCTCACCGAGCAAAATGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTTCACAGCAGGTCTCTACAGATGTCATCCAGCTCCTCCCATCGCTCTGCGTCATTGTGACCAGCAGTGCTGGAACCGACCACATAGACTTGGTTGAGTGTAGCCACCATGGTATTCAGGTTGTCTCTGTTCCAGGAGATCAAGCCAAGGATGTTGCTGACATGGCTGTGGGGTTGTTGATTGATGTGTTGTGGAAAATTTCTGCCGCTGATCGACATGTTAGGAAATGGGGTCCTTCTATGCACCGGAACCTTTCTTTTGGTTCCAAGCTTAAAGGCAAGCGAGTAGGGATTGTTGGATTGGGAAAAATTGGCAAAGAAGTTGCTAAAAGGCTTGAGCCCTTTGGTTGCAGAATTATGTACCATTCGAGAAACCAGAAGCCATTTATCTCGTACCCTTTTTATTCTAAAGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTGTTGCCCACTTAACGAGCAATCAAGGCACTTAATCAACAGGGAAGTGATGTTGGCATTGGGGAAAGATGGAGCTATTGTCAACGTTGGACGTGGAGCTCTAATTGATGAAAAGGAATTGGTGCGGTGTTTGATGGAAGATGAGATAAGGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAACGAGCTCTTTCCATTGGATAATGTGGTCCTCTCCCCACATGCTGCTTCATTGACTTCAGATGGTTTCACTGAAGTATGTGAACTTGCAGCTGAGGCTCTAGAATTGTTCTTTTCAAGTAAATTACCAAGTATTCGATTGTTGGATGGCTAAATTCATGTTATTCTATTTTAGAGTTTTTCTTTCCATTTCCATTACCTATAAACTAAAAATATGTCTTACCCATATTTTATTTTTTTGGCAAAATCACTTTATATTAATAGTTATGAGTGTACTTCTTACCAAACATAGAAGTTAGCAGCCAACAAAATTCAGTGTCCCATTTCTTTTGATAACTCTATAACTACAACAATTGATGTCATCTACTTGTGCATTTGAGAGACACTCTTGTCATGCATGCATAATAGTGAAGTTTGTGGCTTTCAAAGAAAGCTCAACTGATGTGTGAGATACATGTAAGCTACAAAAGCTGTAGTCCTACTTTTCTTGCCTTAATGAAACTGATTTGTTTCTGCATGCATTATGCTCATCTAGTGGAAGATGTTAT
>Glyma07g08961.1 sequence type=CDS gene model=Glyma07g08961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATGGCAGAAAAACACAACCACATTGATAATAAGGAGATTCAACCACTCCTTGTGTTTGGTCCTCCATTAATCTTCCCAACTTTTGAAGCTCGAAACTTTCACAAATACCGATTCCTCAAAGCTTTCTCCTCACAACTCCCTCTCCACCAATTCCTCACCGAGCAAAATGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTTCACAGCAGGTCTCTACAGATGTCATCCAGCTCCTCCCATCGCTCTGCGTCATTGTGACCAGCAGTGCTGGAACCGACCACATAGACTTGGTTGAGTGTAGCCACCATGGTATTCAGGTTGTCTCTGTTCCAGGAGATCAAGCCAAGGATGTTGCTGACATGGCTGTGGGGTTGTTGATTGATGTGTTGTGGAAAATTTCTGCCGCTGATCGACATGTTAGGAAATGGGGTCCTTCTATGCACCGGAACCTTTCTTTTGGTTCCAAGCTTAAAGGCAAGCGAGTAGGGATTGTTGGATTGGGAAAAATTGGCAAAGAAGTTGCTAAAAGGCTTGAGCCCTTTGGTTGCAGAATTATGTACCATTCGAGAAACCAGAAGCCATTTATCTCGTACCCTTTTTATTCTAAAGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTGTTGCCCACTTAACGAGCAATCAAGGCACTTAATCAACAGGGAAGTGATGTTGGCATTGGGGAAAGATGGAGCTATTGTCAACGTTGGACGTGGAGCTCTAATTGATGAAAAGGAATTGGTGCGGTGTTTGATGGAAGATGAGATAAGGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAACGAGCTCTTTCCATTGGATAATGTGGTCCTCTCCCCACATGCTGCTTCATTGACTTCAGATGGTTTCACTGAAGTATGTGAACTTGCAGCTGAGGCTCTAGAATTGTTCTTTTCAAGTAAATTACCAAGTATTCGATTGTTGGATGGCTAA >Glyma07g08961.2 sequence type=CDS gene model=Glyma07g08961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTATGGCAGAAAAACACAACCACATTGATAATAAGGAGATTCAACCACTCCTTGTGTTTGGTCCTCCATTAATCTTCCCAACTTTTGAAGCTCGAAACTTTCACAAATACCGATTCCTCAAAGCTTTCTCCTCACAACTCCCTCTCCACCAATTCCTCACCGAGCAAAATGTTGACCCTTCATCCATTCAAGCCATACTCTGCAGCCCTTCACAGCAGGTCTCTACAGATGTCATCCAGCTCCTCCCATCGCTCTGCGTCATTGTGACCAGCAGTGCTGGAACCGACCACATAGACTTGGTTGAGTGTAGCCACCATGGTATTCAGGTTGTCTCTGTTCCAGGAGATCAAGCCAAGGATGTTGCTGACATGGCTGTGGGGTTGTTGATTGATGTGTTGTGGAAAATTTCTGCCGCTGATCGACATGTTAGGAAATGGGGTCCTTCTATGCACCGGAACCTTTCTTTTGGTTCCAAGCTTAAAGGCAAGCGAGTAGGGATTGTTGGATTGGGAAAAATTGGCAAAGAAGTTGCTAAAAGGCTTGAGCCCTTTGGTTGCAGAATTATGTACCATTCGAGAAACCAGAAGCCATTTATCTCGTACCCTTTTTATTCTAAAGTTGTTGAGCTTGCTGGTAATAGTGATGTCCTTGTGCTTTGTTGCCCACTTAACGAGCAATCAAGGCACTTAATCAACAGGGAAGTGATGTTGGCATTGGGGAAAGATGGAGCTATTGTCAACGTTGGACGTGGAGCTCTAATTGATGAAAAGGAATTGGTGCGGTGTTTGATGGAAGATGAGATAAGGGGTGCTGGCTTGGATGTGTTTGAGAATGAGCCTAATGTTCCCAACGAGCTCTTTCCATTGGATAATGTGGTCCTCTCCCCACATGCTGCTTCATTGACTTCAGATGGTTTCACTGAAGTATGTGAACTTGCAGCTGAGGCTCTAGAATTGTTCTTTTCAAGTAAATTACCAAGTATTCGATTGTTGGATGGCTAA
>Glyma07g08961.1 sequence type=predicted peptide gene model=Glyma07g08961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAEKHNHIDNKEIQPLLVFGPPLIFPTFEARNFHKYRFLKAFSSQLPLHQFLTEQNVDPSSIQAILCSPSQQVSTDVIQLLPSLCVIVTSSAGTDHIDLVECSHHGIQVVSVPGDQAKDVADMAVGLLIDVLWKISAADRHVRKWGPSMHRNLSFGSKLKGKRVGIVGLGKIGKEVAKRLEPFGCRIMYHSRNQKPFISYPFYSKVVELAGNSDVLVLCCPLNEQSRHLINREVMLALGKDGAIVNVGRGALIDEKELVRCLMEDEIRGAGLDVFENEPNVPNELFPLDNVVLSPHAASLTSDGFTEVCELAAEALELFFSSKLPSIRLLDG* >Glyma07g08961.2 sequence type=predicted peptide gene model=Glyma07g08961 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAEKHNHIDNKEIQPLLVFGPPLIFPTFEARNFHKYRFLKAFSSQLPLHQFLTEQNVDPSSIQAILCSPSQQVSTDVIQLLPSLCVIVTSSAGTDHIDLVECSHHGIQVVSVPGDQAKDVADMAVGLLIDVLWKISAADRHVRKWGPSMHRNLSFGSKLKGKRVGIVGLGKIGKEVAKRLEPFGCRIMYHSRNQKPFISYPFYSKVVELAGNSDVLVLCCPLNEQSRHLINREVMLALGKDGAIVNVGRGALIDEKELVRCLMEDEIRGAGLDVFENEPNVPNELFPLDNVVLSPHAASLTSDGFTEVCELAAEALELFFSSKLPSIRLLDG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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