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Report for Sequence Feature Glyma07g08950

Feature Type:gene_model
Chromosome:Gm07
Start:7480416
stop:7483393
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g08950
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51810AT Annotation by Michelle Graham. TAIR10: gibberellin 20 oxidase 2 | chr5:21055389-21056746 REVERSE LENGTH=378 SoyBaseE_val: 1.00E-168ISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009686GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016706GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors SoyBaseN/AISS
GO:0045544GO-mf Annotation by Michelle Graham. GO Molecular Function: gibberellin 20-oxidase activity SoyBaseN/AISS
KOG0143 KOG Iron/ascorbate family oxidoreductases JGI ISS
PTHR10209Panther FE(II)/ ASCORBATE OXIDASE SUPERFAMILY JGI ISS
PTHR10209:SF55Panther OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI JGI ISS
PF03171PFAM 2OG-Fe(II) oxygenase superfamily JGI ISS
UniRef100_I1KIK7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIK7_SOYBN SoyBaseE_val: 0ISS
UniRef100_O04282UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 20-oxidase n=1 Tax=Phaseolus vulgaris RepID=O04282_PHAVU SoyBaseE_val: 0ISS

Proteins Associated with Glyma07g08950
LocusGene SymbolProtein Name
GA20OX gibberellin oxidase gene 20

Expression Patterns of Glyma07g08950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g08950
ParalogEvidenceComments
Glyma03g02260 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g08950 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g081700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g08950
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g08950
>Glyma07g08950.1   sequence type=CDS   gene model=Glyma07g08950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTAGTTCCTCATCCTTCAATGCTAATTGCACCTCAAAACACCGTAGAAAATCATGACAACATCATGGAAGGACAGAAACTACACTTTGATGGATCTTTGATGCCAAACCAATCCAACATACCCTCCCAGTTCATATGGCCTGATCATGAAAAACCATGCCTAACACCACCAGAACTCCAAATTCCACCCATTGACTTGAAGTGCTTTCTCTCAGCAGATCCACAAGCTTTGTCAACAGTTTGTGCTGAATTGAGTGAGGCATGCAAGAAGCATGGCTTCTTCCTTGTTGTCAACCATGGAGTTGATAGCAAGCTCATAGCTCAAGCTCATAAGCTCATAGATGATTTCTTCTGCATGCAACTCTCACAGAAGCAGAAGGCTCAGAGAAAGATTGGAGAACATTGTGGCTATGCTAATAGCTTCATTGGAAGATTCTCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCATTATTCTGCAGATAAATCCAGAAAAACTGTGGAGGATTATTTCCTTAATGTCATGGGGGAAGATTTCAAGCAATTTGGGAGTGTGTTCCAAGAATACTGTGAAGCCATGAGCAAACTCTCTCTTGGGATAATGGAGCTTCTGGGGATGAGCCTAGGAGTTGGCAGGGAATGTTTCAGAGATTTCTTCGAAGGAAATGAGTCGGTTATGAGGTTGAATTACTACCCACCATGCCAAAAACCTGAGTTAGCTTTAGGAACTGGACCTCATTGTGACCCTACATCCCTAACCATTCTCCACCAAGATCAAGTCGAGGGCCTCCAAGTCTTTGTTGATGGAAGATGGTACTCTGTCGCTCCTAAAGAAGATGCTTTCGTTGTCAATATTGGCGACACATTTATGGCTCTATCGAATGGGATGTTCAAGAGTTGCTTGCATAGAGCAGTTGTAAACAACAAAATTGTGAGAAAATCACTTGCTTTCTTCCTATGTCCAAATAGAGACAAAGTGGTCACCCCTCCAAAAGATCTAATCAGCTACGAAAATTCAAGAACATACCCAGATTTCACATGGCCAAGCCTTCTTGAATTTACACAGAAACACTACAGATCTGACACAAAAACACTTGATGCTTTCTCGAGATGGCTACTAGAAAAAAACAATCCGAACAGGGGTGCCCCCACAAATGTTCCATGGCCAACAAAATCTATAAACTGA
Predicted protein sequences of Glyma07g08950
>Glyma07g08950.1   sequence type=predicted peptide   gene model=Glyma07g08950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVPHPSMLIAPQNTVENHDNIMEGQKLHFDGSLMPNQSNIPSQFIWPDHEKPCLTPPELQIPPIDLKCFLSADPQALSTVCAELSEACKKHGFFLVVNHGVDSKLIAQAHKLIDDFFCMQLSQKQKAQRKIGEHCGYANSFIGRFSSKLPWKETLSFHYSADKSRKTVEDYFLNVMGEDFKQFGSVFQEYCEAMSKLSLGIMELLGMSLGVGRECFRDFFEGNESVMRLNYYPPCQKPELALGTGPHCDPTSLTILHQDQVEGLQVFVDGRWYSVAPKEDAFVVNIGDTFMALSNGMFKSCLHRAVVNNKIVRKSLAFFLCPNRDKVVTPPKDLISYENSRTYPDFTWPSLLEFTQKHYRSDTKTLDAFSRWLLEKNNPNRGAPTNVPWPTKSIN*






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