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Report for Sequence Feature Glyma07g08880

Feature Type:gene_model
Chromosome:Gm07
Start:7388104
stop:7388895
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g08880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16790AT Annotation by Michelle Graham. TAIR10: Tho complex subunit 7/Mft1p | chr5:5522642-5523475 REVERSE LENGTH=233 SoyBaseE_val: 2.00E-56ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
KOG3215 KOG Uncharacterized conserved protein JGI ISS
PTHR14854Panther NIF3L1BP1 PROTEIN-RELATED JGI ISS
PF05615PFAM Tho complex subunit 7 JGI ISS
UniRef100_G7IK98UniRef Annotation by Michelle Graham. Most informative UniRef hit: THO complex subunit-like protein n=2 Tax=Medicago truncatula RepID=G7IK98_MEDTR SoyBaseE_val: 4.00E-72ISS
UniRef100_I1KIK1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIK1_SOYBN SoyBaseE_val: 6.00E-117ISS

Expression Patterns of Glyma07g08880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g08880 not represented in the dataset
Glyma07g08880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g08880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g081200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g08880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g08880
>Glyma07g08880.1   sequence type=CDS   gene model=Glyma07g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAAGGTTTCGACGCGTGGCGATTCCGTGGCGGCGAACTACGCCTTCAGTCCCTCCGAAGATGATGTAATCATGAAGCACAGGCTTCTCACGCGCACCACCACCACCAGGGGCGACCCTCCTTTGAAGAAGCTTCAGAAGAAGTTCACCTCGTTCGTCTCCGAAGTCGACAAGGACAAAGACAACAACTACAACGACTGCGAGAAGCTCGCCAGAGCCTTTCTGCAGGAGCTAATGACATTCGAGATTCTTTTTCTGAAGAGCAAGGCGATTGTGGAGGCCAACATTAGGGAGAAGGATATTCAACGAGCGCAGGATGACATTGAGGATCTCAATAAGCAGCTTAAGGAGAGCAAGGAAGTTGATTGCCATGCAGCCCCGAGGTCCGAGACTATGAAGGTTATTTTAGAGTTGGAGAATGAAATTTCCGCTTTGGACGCCGAGAACACGGCTGGTTCGAGGTTGTTGGAGCTTAGGAAGAAGCAATTTGCGCTGTTGTGA
Predicted protein sequences of Glyma07g08880
>Glyma07g08880.1   sequence type=predicted peptide   gene model=Glyma07g08880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKVSTRGDSVAANYAFSPSEDDVIMKHRLLTRTTTTRGDPPLKKLQKKFTSFVSEVDKDKDNNYNDCEKLARAFLQELMTFEILFLKSKAIVEANIREKDIQRAQDDIEDLNKQLKESKEVDCHAAPRSETMKVILELENEISALDAENTAGSRLLELRKKQFALL*






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