Glyma07g08870 - SoyBase

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Report for Sequence Feature Glyma07g08870

Feature Type:	gene_model
Chromosome:	Gm07
Start:	7385068
stop:	7388041
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g08870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47210	AT	Annotation by Michelle Graham. TAIR10: cyclin-dependent protein kinase 3;2 \| chr1:17301036-17301695 FORWARD LENGTH=192	SoyBase	E_val: 1.00E-12	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004693	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
UniRef100_I1JUI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JUI2_SOYBN	SoyBase	E_val: 8.00E-13	ISS
UniRef100_Q39878	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitotic cyclin a2-type n=1 Tax=Glycine max RepID=Q39878_SOYBN	SoyBase	E_val: 2.00E-12	ISS

Expression Patterns of Glyma07g08870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g08870 not represented in the dataset	Glyma07g08870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g08870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g081100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g08870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g08870

Limit To All Plant Sequences

>Glyma07g08870.1   sequence type=CDS   gene model=Glyma07g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCCAGAACTCTCCAAACAGAGCTTCAAAGGAAACCATTGACCAACTACATGGAGAAGTTGCAGAAAGATATTAATCCTAGCATGCGTCGAATTCTGGTTGATTGGCTTGTGGAGTGTGATGATTATAAAGTCAAACAGGAGCAAATTCCCCTCCTCACATCACATGTTCCTCCATCCTCAACAGCACACTAA

Predicted protein sequences of Glyma07g08870

Limit To All Plant Sequences

>Glyma07g08870.1   sequence type=predicted peptide   gene model=Glyma07g08870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSRTLQTELQRKPLTNYMEKLQKDINPSMRRILVDWLVECDDYKVKQEQIPLLTSHVPPSSTAH*

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