Glyma07g08090 - SoyBase

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Report for Sequence Feature Glyma07g08090

Feature Type:	gene_model
Chromosome:	Gm07
Start:	6736275
stop:	6740287
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g08090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G61220	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr3:22663025-22664316 FORWARD LENGTH=296	SoyBase	E_val: 1.00E-118	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008106	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0047501	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (+)-neomenthol dehydrogenase activity	SoyBase	N/A	ISS
GO:0047504	GO-mf	Annotation by Michelle Graham. GO Molecular Function: (-)-menthol dehydrogenase activity	SoyBase	N/A	ISS
KOG1208	KOG	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	JGI		ISS
PTHR24322	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24322:SF19	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00106	PFAM	short chain dehydrogenase	JGI		ISS
UniRef100_G7J257	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: (+)-neomenthol dehydrogenase n=1 Tax=Medicago truncatula RepID=G7J257_MEDTR	SoyBase	E_val: 2.00E-155	ISS
UniRef100_I1KIE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIE8_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma07g08090

Locus	Gene Symbol	Protein Name
	SDR	short-chain dehydrogenase/reductase (SDR) family protein

Expression Patterns of Glyma07g08090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g08090 not represented in the dataset	Glyma07g08090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g08090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g074400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g08090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g08090

Limit To All Plant Sequences

>Glyma07g08090.2   sequence type=transcript   gene model=Glyma07g08090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTACAGTTGTTGTATTATCATGGTAAGATAGTAATATGACAGAAACAAGCTTCTTTTTGACTTTTAGAGTTACGTACCTAGCTAGCACAATTAAAAAAGCCAAAAGAGGAGAAAGTAGTCATCATCATCATCATCTTCATCTTCTAGCTAATTAATTGCCCCCATAACTTTGAAAATTGAGTTCAACAAGGTCATATCATATGATCATCATAACGTTCTGTTCCCTTAAGTTGAAAATTGCTGTGCAAAATGAATCTATAATACTGGCTATTCAGAAGGGGCAAAAATCAGAAATCAAAAGAGGGGACATTCTGTGAGAGCATCCAATAGCATCGAGTAATTCATTTGAAAACAACAACATTTGTCTTATTAAAAGTATGGCAACCACAACAGGTTTGCAATAGCTGACTTGAAAGTTGACACTGAAGATGGGAGAAACTACAGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTAGAGATAGTTAGACAATTAGCTTCAGCTGGAATCAAGGTGGTGCTCACTGCAAGAAATGAAGAGAGGGGTATCCAAGCACTGCAAACACTCAAGGACTCAGGTCTATCTCACCTTGTACTGTTTCATCAAGTTGATGTGGCTGATGCAACAAGTGTAGCTTCTCTGGCAGATTTTATCAAATCTAAATTTGGAAAACTTGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCTGTAATTAAAGACACAGATTCATTCACTTCACTTCTCTTGAAGCGTGGGGCAGCACCAGAAGAAGATGTGACAAAGGCAATCACTCAATCATATGAGTTGGCTGAAGAATGCTTGCAAATAAATTACTATGGTGCTAAAACAACTGTAGAATCCCTTCTGCCCCTCCTCCAGTTATCTGATTCACCGAGAATTGTGAATGTATCATCAACTATGGGGCAGTTAGAGAGTTTGCCAAAAGGATCATGGGCTAGAGAAGTCTTCAGTGATGCCAATATCATCACTGAAGAGAAAGTGGATGAAATATTGAAGAAGTTTTTGAGAGATTTCCAAGAAGGCTCATTAGAAAGTAATGGGTGGCCAAGACATCTGGGTGCTTATATTGTCTCTAAAGCTGCTATGAATGCGTATACTAGAATCCTTGCTAAGAAATACCCTTCATTCTGCATCAATAGTGTTTGCCCTGGTTATGTCAAGACAGATATAACTGCCAACACTGGCCTCTTAACAGTTGAAGAAGGTGCAGCTAGTCCTGTGAGGCTAGCATTGCTTCCCAATGGTAGTCCATCTGGCCTTTTCTATTACCGGAGCGATGTGGCTTCCTTTTGATTAGGAATGCAATTTCATGGTTTGAGGGCAATATGCATTGCTTTTACTTCTCAATTTATTGAGCCTATTTCAAGAACATTATAGTATGTTGTATTTGGATCACATCATTATCATGGTTTCAGTTTCTGATTCTGCACAACACACCATGTTTATTGAGCATTTGTCAAGCACATTATATTATATCATGCTGTATTTGCAATTTTACATCATATCATTGTCATGTTGCAAATTTATTTTATAATTATACATTATATCATGTTGTATGCCATTGGCAGTGTCCTAGTTTGTCTATGGATGTATAATGGTTTGGTGTACAACAATATATATATATATATATATATATATATATGCATCATAATTTTGATTAGTCATCCTTAAATGTCAGCTGAGGATGTATGTAGCATTGACATTGTTCCATATTCTTTGGCTTTCGAAAAGCACGTATAGTATGGCGTCATATTTCCATTGTATAATCATGAGTATGACAAGTAGTGGGTTTTTT

Coding sequences of Glyma07g08090

Limit To All Plant Sequences

>Glyma07g08090.1   sequence type=CDS   gene model=Glyma07g08090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAACTACAGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTAGAGATAGTTAGACAATTAGCTTCAGCTGGAATCAAGGTGGTGCTCACTGCAAGAAATGAAGAGAGGGGTATCCAAGCACTGCAAACACTCAAGGACTCAGGTCTATCTCACCTTGTACTGTTTCATCAAGTTGATGTGGCTGATGCAACAAGTGTAGCTTCTCTGGCAGATTTTATCAAATCTAAATTTGGAAAACTTGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCTGTAATTAAAGACACAGATTCATTCACTTCACTTCTCTTGAAGCGTGGGGCAGCACCAGAAGAAGATGTGACAAAGGCAATCACTCAATCATATGAGTTGGCTGAAGAATGCTTGCAAATAAATTACTATGGTGCTAAAACAACTGTAGAATCCCTTCTGCCCCTCCTCCAGTTATCTGATTCACCGAGAATTGTGAATGTATCATCAACTATGGGGCAGTTAGAGAGTTTGCCAAAAGGATCATGGGCTAGAGAAGTCTTCAGTGATGCCAATATCATCACTGAAGAGAAAGTGGATGAAATATTGAAGAAGTTTTTGAGAGATTTCCAAGAAGGCTCATTAGAAAGTAATGGGTGGCCAAGACATCTGGGTGCTTATATTGTCTCTAAAGCTGCTATGAATGCGTATACTAGAATCCTTGCTAAGAAATACCCTTCATTCTGCATCAATAGTGTTTGCCCTGGTTATGTCAAGACAGATATAACTGCCAACACTGGCCTCTTAACAGTTGAAGAAGGTGCAGCTAGTCCTGTGAGGCTAGCATTGCTTCCCAATGGTAGTCCATCTGGCCTTTTCTATTACCGGAGCGATGTGGCTTCCTTTTGA

>Glyma07g08090.2   sequence type=CDS   gene model=Glyma07g08090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGAAACTACAGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTAGAGATAGTTAGACAATTAGCTTCAGCTGGAATCAAGGTGGTGCTCACTGCAAGAAATGAAGAGAGGGGTATCCAAGCACTGCAAACACTCAAGGACTCAGGTCTATCTCACCTTGTACTGTTTCATCAAGTTGATGTGGCTGATGCAACAAGTGTAGCTTCTCTGGCAGATTTTATCAAATCTAAATTTGGAAAACTTGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCTGTAATTAAAGACACAGATTCATTCACTTCACTTCTCTTGAAGCGTGGGGCAGCACCAGAAGAAGATGTGACAAAGGCAATCACTCAATCATATGAGTTGGCTGAAGAATGCTTGCAAATAAATTACTATGGTGCTAAAACAACTGTAGAATCCCTTCTGCCCCTCCTCCAGTTATCTGATTCACCGAGAATTGTGAATGTATCATCAACTATGGGGCAGTTAGAGAGTTTGCCAAAAGGATCATGGGCTAGAGAAGTCTTCAGTGATGCCAATATCATCACTGAAGAGAAAGTGGATGAAATATTGAAGAAGTTTTTGAGAGATTTCCAAGAAGGCTCATTAGAAAGTAATGGGTGGCCAAGACATCTGGGTGCTTATATTGTCTCTAAAGCTGCTATGAATGCGTATACTAGAATCCTTGCTAAGAAATACCCTTCATTCTGCATCAATAGTGTTTGCCCTGGTTATGTCAAGACAGATATAACTGCCAACACTGGCCTCTTAACAGTTGAAGAAGGTGCAGCTAGTCCTGTGAGGCTAGCATTGCTTCCCAATGGTAGTCCATCTGGCCTTTTCTATTACCGGAGCGATGTGGCTTCCTTTTGA

Predicted protein sequences of Glyma07g08090

Limit To All Plant Sequences

>Glyma07g08090.1   sequence type=predicted peptide   gene model=Glyma07g08090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGETTERYAVVTGANKGIGLEIVRQLASAGIKVVLTARNEERGIQALQTLKDSGLSHLVLFHQVDVADATSVASLADFIKSKFGKLDILVNNAGIGGAVIKDTDSFTSLLLKRGAAPEEDVTKAITQSYELAEECLQINYYGAKTTVESLLPLLQLSDSPRIVNVSSTMGQLESLPKGSWAREVFSDANIITEEKVDEILKKFLRDFQEGSLESNGWPRHLGAYIVSKAAMNAYTRILAKKYPSFCINSVCPGYVKTDITANTGLLTVEEGAASPVRLALLPNGSPSGLFYYRSDVASF*

>Glyma07g08090.2   sequence type=predicted peptide   gene model=Glyma07g08090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGETTERYAVVTGANKGIGLEIVRQLASAGIKVVLTARNEERGIQALQTLKDSGLSHLVLFHQVDVADATSVASLADFIKSKFGKLDILVNNAGIGGAVIKDTDSFTSLLLKRGAAPEEDVTKAITQSYELAEECLQINYYGAKTTVESLLPLLQLSDSPRIVNVSSTMGQLESLPKGSWAREVFSDANIITEEKVDEILKKFLRDFQEGSLESNGWPRHLGAYIVSKAAMNAYTRILAKKYPSFCINSVCPGYVKTDITANTGLLTVEEGAASPVRLALLPNGSPSGLFYYRSDVASF*

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