SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01760 | AT | Annotation by Michelle Graham. TAIR10: adenosine deaminases;RNA binding;RNA binding;adenosine deaminases | chr1:276412-278448 REVERSE LENGTH=420 | SoyBase | E_val: 6.00E-104 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004000 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenosine deaminase activity | SoyBase | N/A | ISS |
| PTHR10910 | Panther | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN | JGI | ISS | |
| PTHR10910:SF16 | Panther | gb def: T1N6.17 protein | JGI | ISS | |
| PF02137 | PFAM | Adenosine-deaminase (editase) domain | JGI | ISS | |
| UniRef100_G7KQ26 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Double-stranded RNA-specific adenosine deaminase n=1 Tax=Medicago truncatula RepID=G7KQ26_MEDTR | SoyBase | E_val: 2.00E-143 | ISS |
| UniRef100_UPI0002338C33 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338C33 related cluster n=1 Tax=unknown RepID=UPI0002338C33 | SoyBase | E_val: 0 | ISS |
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Glyma07g07991 not represented in the dataset |
Glyma07g07991 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g01570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g07991.1 sequence type=CDS gene model=Glyma07g07991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACATATCCCAGTTACCATGTGGAGATGCTTCACTGAGCTTTCATGTCTCTCCTTTGGAAACTGTGGTTTTAGGAGAAAGTGATTCAACTTCACCTTTGGATAATGGATCAAAACAAAAGGGGATGGTCCAGAGGAAGCCAGGTCGTGGTGATACAACCCTGTCAGTTAGTTGCTCTGACAAGATAGCTCGTTGGAATGTTGTTGGTGTTCAAGGAGCTTTGCTTTCCTACTTTCTTCAACCTGTATATCTTTCTTCAATTACTGTTGGTCTGCCCCTAAACATCCCTGAGAATTTTCGTTTGGAGGATAACTTGAAAAGAGCTTTGTATGAACGTATTCCACCCTTATTGAATGAACTGACATCTCCGTTTCTAGTGAACCAGCCGATATTTCACGCTGCACCAGTACCCCCAAAGGACTTTCAGCAATCTGAGAGTGCTGCTAACACTTTAACATGCGGATATTCTATAGGTTGGAATGAATGTGGCTTGCATGACATCATCATGGGAACTACTGGAAGAAAGCAAGGCACCTCTGCAAAAGGGGCACTCTACCCATCGACACAGTCATCTTTATGCAAAAAGAGGCTGTTGGAGGTTTTCTTGTCACTGAGACCGGAAAATTTAATCAGTTCTCTGCCCAATGGGATTACTTATCGAGAACTTAAGGATGGAGCTGAAGAATATCATTTGGCTTCCAAAATTTTTAAAGGGAAGCCACCTTTTAACAAGTGGTTCTTGAAACCCTTGGATTGTGAGGCCTTCCACATTTCAGAATAA
>Glyma07g07991.1 sequence type=predicted peptide gene model=Glyma07g07991 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYISQLPCGDASLSFHVSPLETVVLGESDSTSPLDNGSKQKGMVQRKPGRGDTTLSVSCSDKIARWNVVGVQGALLSYFLQPVYLSSITVGLPLNIPENFRLEDNLKRALYERIPPLLNELTSPFLVNQPIFHAAPVPPKDFQQSESAANTLTCGYSIGWNECGLHDIIMGTTGRKQGTSAKGALYPSTQSSLCKKRLLEVFLSLRPENLISSLPNGITYRELKDGAEEYHLASKIFKGKPPFNKWFLKPLDCEAFHISE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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