SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01710 | AT | Annotation by Michelle Graham. TAIR10: Acyl-CoA thioesterase family protein | chr1:262950-266029 FORWARD LENGTH=427 | SoyBase | E_val: 0 | ISS |
| GO:0006637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0030551 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding | SoyBase | N/A | ISS |
| GO:0047617 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA hydrolase activity | SoyBase | N/A | ISS |
| KOG3016 | KOG | Acyl-CoA thioesterase | JGI | ISS | |
| PTHR11066 | Panther | ACYL-COA THIOESTERASE-RELATED | JGI | ISS | |
| PTHR11066:SF8 | Panther | ACYL-COA THIOESTERASE | JGI | ISS | |
| PF00027 | PFAM | Cyclic nucleotide-binding domain | JGI | ISS | |
| PF02551 | PFAM | Acyl-CoA thioesterase | JGI | ISS | |
| UniRef100_B9RDR2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA thioesterase, putative n=1 Tax=Ricinus communis RepID=B9RDR2_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023381DA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023381DA related cluster n=1 Tax=unknown RepID=UPI00023381DA | SoyBase | E_val: 0 | ISS |
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Glyma07g07771 not represented in the dataset |
Glyma07g07771 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g01210 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g071300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g07771.1 sequence type=CDS gene model=Glyma07g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATTGCATTGCTCCGTGAAAAAATTGGAAAACGAGAAAGCGTTTGAGTTTCTCGGAGGCGTTCCTCTTCTGCAGAGGCTTCCGAGCTCGTCTCTGAGGAAGATAGCTCAACTTGTGGATGTCAAACACTGTGAGCCAGGAGAGTATGTTGTTCGCGAGGGTGAACCTGGAGATGGCGTGTACTTCATATTGGATGGAGAGGCTGAGGTTCTTGGATCTGCTAGGGCCAATGATGAAAATCGACCAGAGTTCCAATTGAAACAATATGACTACTTTGGTTATGGTTTGTCAAACACAGTTCACCAGGCAGATGTTGTTGCTTTGTCTAAGCTCACATGCTTAGTGCTTCCCCATGTGCACTCAACACTGCTGCAGCCAAAGTCTATCTGGAGAGCAGAAAATTCTCTCCAGACATGCTCACCTGTGGAGAATATATTGCATTTGGAGCCCCTTGAGGTAGATATCTTCCAAGGAGTTACCCTTCCAGATGCTCCAAGATTTGGAAAGGTGTTTGGGGGGCAGATGATTGGACAGGCACTGGCTGCAGCTTCAAAATCTGTTGACTGTCTTAAGGTTGTTCATAGTTTGCATGCCTATTTTATTCTTGCGGGGGATTTAAACATGCCAATTACATATCAAATTCACCGTCTCCGTGATGGAAAGAGCTTCGCTTCAAGGAAAGTGGATGGAATTCAAAAGGGAAATGTCATATTCACTCTGATGGCTTCATTTCAAAAAGAAGAATCAGGGATGGTCCACCAAGAGGTAGCTATACCATCTGTCCCTGCTCCAGATAAGCTTCTGCCGATGGAAGAGCTACGGGAGAGACGTCTTACTGACCCTCGTTTACCAATAACCTATCGGAACAAAGTAGCTACATCTCAATTCATCCCATGGCCCATAGAGATACGATTATGTGAATATGAAACTGCAACAAATATGACAAAATCTCCTCCCAGTTTGAGATACTGGTTTAGAGCCAAGGGAAAACTTTCAGATGATCAAGCCTTGCATAGGTGTGTGGTGGCATATGCTTCAGATCTAATATTTCTTCAAGTAAGTTTGAATCCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGACCACTCTATGTGGTTTCACCGATCCGTAAAAGCTGATGACTGGGTGCTATTTGCGATCTTTACTCCTAGTGCCCATAGTGCACGTGTCTTTGTCACCGGCCAAATGTTCAATCAGAAGGGAGAGCTTCTTGTATCATTGGTTCAAGAAGGACTAGCCAGGAAAATTAATCCCGGAAATTCAGCCATTAAATCTATGTTATGA
>Glyma07g07771.1 sequence type=predicted peptide gene model=Glyma07g07771 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELHCSVKKLENEKAFEFLGGVPLLQRLPSSSLRKIAQLVDVKHCEPGEYVVREGEPGDGVYFILDGEAEVLGSARANDENRPEFQLKQYDYFGYGLSNTVHQADVVALSKLTCLVLPHVHSTLLQPKSIWRAENSLQTCSPVENILHLEPLEVDIFQGVTLPDAPRFGKVFGGQMIGQALAAASKSVDCLKVVHSLHAYFILAGDLNMPITYQIHRLRDGKSFASRKVDGIQKGNVIFTLMASFQKEESGMVHQEVAIPSVPAPDKLLPMEELRERRLTDPRLPITYRNKVATSQFIPWPIEIRLCEYETATNMTKSPPSLRYWFRAKGKLSDDQALHRCVVAYASDLIFLQVSLNPHREKGFRTRSVSLDHSMWFHRSVKADDWVLFAIFTPSAHSARVFVTGQMFNQKGELLVSLVQEGLARKINPGNSAIKSML*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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