SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13870 | AT | Annotation by Michelle Graham. TAIR10: calmodulin binding;purine nucleotide binding | chr1:4747437-4748345 REVERSE LENGTH=302 | SoyBase | E_val: 5.00E-166 | ISS |
| GO:0006400 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA modification | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0080178 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 5-carbamoylmethyluridine metabolic process | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0017076 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: purine nucleotide binding | SoyBase | N/A | ISS |
| KOG3062 | KOG | RNA polymerase II elongator associated protein | JGI | ISS | |
| PTHR12435 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF08433 | PFAM | Chromatin associated protein KTI12 | JGI | ISS | |
| UniRef100_B9REF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein KTI12, putative n=1 Tax=Ricinus communis RepID=B9REF6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KIA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KIA5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g07720 not represented in the dataset |
Glyma07g07720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g01166 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g070800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g07720.4 sequence type=transcript gene model=Glyma07g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGCCCAATTTGTCCTAGACCCACAAGCCCAAAACATCAGCATCTTCTTGACAAGAACCCTAAATCTGAAAATACCTTGACTCCGCTCTGCCACTGCTGAGAAAATTGCGACGCGGAAACACGCGCATCTTCACGATCCTGGAATCCACCGCGGCATATCCAGCGATTCCGATCTCCGACGAGTCTGCGCAGGCGAAGAATCGCGCGATTTGTCTGGAAATCGCGATTCAGCCACGATTCATCCCCGATACTGAGACTCAACCACGATTCAGGAAGAAAAACGAGACAACCTCCGATTCGTATCGGTAGCAGTTCGAATCATATCGAATCGGGCGATACATATCGTGAATCGTTGTGTCCTAAAAATGGCACTGGTTGTAATGTGTGGGCAACCATGCAGTGGAAAGTCCAAAGCTGCAGTCTGTCTCGCCGAAGCTCTCAAAGAATCAGAATCAAAACTTCAAGTGAGAATCATAGACGAAGCTTGTTTTCATCTTAATCGTAACCAAAGCTTCGCGAATATGCCTTCGGAGAAGAATTTAAGAGGGGTGCTTAGGTCAGAAGTAGATAGGTCCCTGTCTAAAGATAGCATCATCATAGTAGATTCTTTGAATAACATCAAGGGTTACCGATACGAGCTATGGTGCTTGGCTCGAGCAGCAGGGATCAGATATTGTGTGGTTTTCTGTGATGTTGAAGAAACCATTTGCAGGAAATGGAATGAAGAACGCAGGGAGAAAGGAGAAGCCAATTATGATGATTCGATATTTGAAGATTTGGCAAGAAGGTTTGAGAAACCAGATAGAAGAAACCGGTGGGATTCTCCATTGTTTGAATTATGGCCACACAGAGAAGCAACAGAGAAATCTTCCCCTGCTGTTGTAGATGCTGTCTCCTACTTAACCAAGAAAGTGGACTCCAAAACCAGGGATGTTAAGATACTACAACCAACTATTGCAACTCAAACCTCGCGTTTTTCTGATGCAAATTCTCTCTATGAGTTGGACAAAGCAACACAAGAGGTCACAAATGCTATAGTAGAAGCACAATCTCAAGCTCTTGGAGGACCACTTAATGGAGTTTCCATAGGGAAAGACTTGCCTGTAATTAACATTTCAAGGTCAGTTGGGCTTCCAGAGCTTCGTAGGATGCGCCGTACCTTCATAAAATTGACAGGGCAAACAAGTTTAAGTGGGCCACCACCTCCTTCTGATGCAGATAGTGCAAAAAGAATGTTCATTGACTACTTGAACAGGGAACTGGGAACATCCTGAAAGATATGATAGTCTTGCAATTCATCTTATATGTGTGCTAAAAGATGCCATGTTTGTGTGTTTAGATCCTGAGCTGTTTTATATTTACCTAGAGCATTATTATTGAATACACTGCTTTTTTGAATTCCCTCTTTATTCTACTATCATTTAATTTTCTCTTCCCTGCCCAAGTCCAAGTAATGAAGTAAAGATGGTAACTCTTTGGTTTAGGAAAACATTTTTTTGCATTATTTTTCAAATAATTTATAATAATGTCGTTTTATTTTTTATTTTCTATTTTAGACATTTCATTAGCTTTTTAGCTTT
>Glyma07g07720.3 sequence type=CDS gene model=Glyma07g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTGGTTGTAATGTGTGGGCAACCATGCAGTGGAAAGTCCAAAGCTGCAGTCTGTCTCGCCGAAGCTCTCAAAGAATCAGAATCAAAACTTCAAGTGAGAATCATAGACGAAGCTTGTTTTCATCTTAATCGTAACCAAAGCTTCGCGAATATGCCTTCGGAGAAGAATTTAAGAGGGGTGCTTAGGTCAGAAGTAGATAGGTCCCTGTCTAAAGATAGCATCATCATAGTAGATTCTTTGAATAACATCAAGGGTTACCGATACGAGCTATGGTGCTTGGCTCGAGCAGCAGGGATCAGATATTGTGTGGTTTTCTGTGATGTTGAAGAAACCATTTGCAGGAAATGGAATGAAGAACGCAGGGAGAAAGGAGAAGCCAATTATGATGATTCGATATTTGAAGATTTGGCAAGAAGGTTTGAGAAACCAGATAGAAGAAACCGGTGGGATTCTCCATTGTTTGAATTATGGCCACACAGAGAAGCAACAGAGAAATCTTCCCCTGCTGTTGTAGATGCTGTCTCCTACTTAACCAAGAAAGTGGACTCCAAAACCAGGGATGTTAAGATACTACAACCAACTATTGCAACTCAAACCTCGCGTTTTTCTGATGCAAATTCTCTCTATGAGTTGGACAAAGCAACACAAGAGGTCACAAATGCTATAGTAGAAGCACAATCTCAAGCTCTTGGAGGACCACTTAATGGAGTTTCCATAGGGAAAGACTTGCCTGTAATTAACATTTCAAGGTCAGTTGGGCTTCCAGAGCTTCGTAGGATGCGCCGTACCTTCATAAAATTGACAGGGCAAACAAGTTTAAGTGGGCCACCACCTCCTTCTGATGCAGATAGTGCAAAAAGAATGTTCATTGACTACTTGAACAGGGAACTGGGAACATCCTGA >Glyma07g07720.4 sequence type=CDS gene model=Glyma07g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTGGTTGTAATGTGTGGGCAACCATGCAGTGGAAAGTCCAAAGCTGCAGTCTGTCTCGCCGAAGCTCTCAAAGAATCAGAATCAAAACTTCAAGTGAGAATCATAGACGAAGCTTGTTTTCATCTTAATCGTAACCAAAGCTTCGCGAATATGCCTTCGGAGAAGAATTTAAGAGGGGTGCTTAGGTCAGAAGTAGATAGGTCCCTGTCTAAAGATAGCATCATCATAGTAGATTCTTTGAATAACATCAAGGGTTACCGATACGAGCTATGGTGCTTGGCTCGAGCAGCAGGGATCAGATATTGTGTGGTTTTCTGTGATGTTGAAGAAACCATTTGCAGGAAATGGAATGAAGAACGCAGGGAGAAAGGAGAAGCCAATTATGATGATTCGATATTTGAAGATTTGGCAAGAAGGTTTGAGAAACCAGATAGAAGAAACCGGTGGGATTCTCCATTGTTTGAATTATGGCCACACAGAGAAGCAACAGAGAAATCTTCCCCTGCTGTTGTAGATGCTGTCTCCTACTTAACCAAGAAAGTGGACTCCAAAACCAGGGATGTTAAGATACTACAACCAACTATTGCAACTCAAACCTCGCGTTTTTCTGATGCAAATTCTCTCTATGAGTTGGACAAAGCAACACAAGAGGTCACAAATGCTATAGTAGAAGCACAATCTCAAGCTCTTGGAGGACCACTTAATGGAGTTTCCATAGGGAAAGACTTGCCTGTAATTAACATTTCAAGGTCAGTTGGGCTTCCAGAGCTTCGTAGGATGCGCCGTACCTTCATAAAATTGACAGGGCAAACAAGTTTAAGTGGGCCACCACCTCCTTCTGATGCAGATAGTGCAAAAAGAATGTTCATTGACTACTTGAACAGGGAACTGGGAACATCCTGA
>Glyma07g07720.3 sequence type=predicted peptide gene model=Glyma07g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALVVMCGQPCSGKSKAAVCLAEALKESESKLQVRIIDEACFHLNRNQSFANMPSEKNLRGVLRSEVDRSLSKDSIIIVDSLNNIKGYRYELWCLARAAGIRYCVVFCDVEETICRKWNEERREKGEANYDDSIFEDLARRFEKPDRRNRWDSPLFELWPHREATEKSSPAVVDAVSYLTKKVDSKTRDVKILQPTIATQTSRFSDANSLYELDKATQEVTNAIVEAQSQALGGPLNGVSIGKDLPVINISRSVGLPELRRMRRTFIKLTGQTSLSGPPPPSDADSAKRMFIDYLNRELGTS* >Glyma07g07720.4 sequence type=predicted peptide gene model=Glyma07g07720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALVVMCGQPCSGKSKAAVCLAEALKESESKLQVRIIDEACFHLNRNQSFANMPSEKNLRGVLRSEVDRSLSKDSIIIVDSLNNIKGYRYELWCLARAAGIRYCVVFCDVEETICRKWNEERREKGEANYDDSIFEDLARRFEKPDRRNRWDSPLFELWPHREATEKSSPAVVDAVSYLTKKVDSKTRDVKILQPTIATQTSRFSDANSLYELDKATQEVTNAIVEAQSQALGGPLNGVSIGKDLPVINISRSVGLPELRRMRRTFIKLTGQTSLSGPPPPSDADSAKRMFIDYLNRELGTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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