Glyma07g07665 - SoyBase

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Report for Sequence Feature Glyma07g07665

Feature Type:	gene_model
Chromosome:	Gm07
Start:	6342145
stop:	6347546
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g07665

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01690	AT	Annotation by Michelle Graham. TAIR10: putative recombination initiation defects 3 \| chr1:249242-252221 FORWARD LENGTH=449	SoyBase	E_val: 7.00E-65	ISS
GO:0009553	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo sac development	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0042138	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation	SoyBase	N/A	ISS
GO:0051026	GO-bp	Annotation by Michelle Graham. GO Biological Process: chiasma assembly	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7LBR5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Protein PAIR1 n=1 Tax=Medicago truncatula RepID=G7LBR5_MEDTR	SoyBase	E_val: 2.00E-160	ISS
UniRef100_G7LBR5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein PAIR1 n=1 Tax=Medicago truncatula RepID=G7LBR5_MEDTR	SoyBase	E_val: 2.00E-160	ISS

Expression Patterns of Glyma07g07665

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g07665 not represented in the dataset	Glyma07g07665 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g07665

Paralog	Evidence	Comments
Glyma03g01121	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g07665 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g070400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g07665

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g07665

Limit To All Plant Sequences

>Glyma07g07665.1   sequence type=CDS   gene model=Glyma07g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCAACAAAGCCTGCGATCTTAACTCCATCTCTGTCTTTCCTCCTCCTCTCGTTTATCCTAGGAAAGCGAACAATATATCGAGTGGATTGCAAGCGTCTCACTCTCAGCATCGCTCGCAGCCATCTCAGCAGTCGCTTTCTCAGGGACTTTCGTCTCAGCACGGAGTGCTGTCGCATTTCTCCCAAAACTCTCTCGACGAGGCCGTCACGACTAACGATCAGAGAGTTGGTTCTCAAGAACATGAGAACTCTTTGAGGAGGATTTCTAGCTTGTCCCGACCTACATATTCACGGGAAGAGAGTCAAGCACCTAACTCAAGATCTTCATCCAATCTAATGCTCAAATGGAATTCTGCAGATCATAAAAGTCAGTTAAGTGAAGGACTTGAACACCGAATTGGCATAATGGAAACTTCATTGAGCAGGTTCACAATGATCTTGGATTCTGTTCAAAGTGACGTAATGCAAGTAAACAAAGGAACAAAGGAAATTATTTTGGAGGTGGAATGCATAAGGCAGAAGTTGATTGCTCAGGATAACTCACTTCAGTTAATGACTAAAGGACAAGAAGAAATTAAAGCAATCATTGAAAGGAGCTTGAAATCTTTAGCTGAACAAATGAGCCATGTTTCAAAGAAAGAGAAGTTACAGGATGTATATTTGGCAGTTTCTGCGTTACCTCAGCTAATTGAAGCCTCTCTGCAAAATGTACAAAATGATCTCCGTAACATCACCAAGGAAATGCAGGAAATTTCTTGCAATCTAAAAAGTGTCAACCAAAAGGATCTGGTGCCGACCAGTTTGTCTTCGAAGAGTATTAGCAAACAGATTACCACACCGAAAATGCGTCAGCCTCTTGCTAATGAGGCGAAGGTGAGTATACAAGCCACTGTAGCTCCAGAGGTGGAAAGCGGAGGCTGGAAGCCAGTAAAAAAAGAAAGAGTCACTTTTTCAGATAGAACTTCTGAGAAGGTGCAGAAGAAAAAAGAACCACACACTCAGAAGTATATAAGGGGAGGTAGAGACTGTGCTATTGTCATTGAATCTGATGAGGAGATTGATGGAGGTTTTTCCTGCTTGGTCCAAGAAAACGCAGGAGTAAACCTTCTTGGCAACTTGACCAAGGAAGCACTGGAAGAAACTGAGCGAATTTTGCGGAAAGCAAGGAGGCGCAAGAGGAAAAGTATTTTTTAA

Predicted protein sequences of Glyma07g07665

Limit To All Plant Sequences

>Glyma07g07665.1   sequence type=predicted peptide   gene model=Glyma07g07665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKINKACDLNSISVFPPPLVYPRKANNISSGLQASHSQHRSQPSQQSLSQGLSSQHGVLSHFSQNSLDEAVTTNDQRVGSQEHENSLRRISSLSRPTYSREESQAPNSRSSSNLMLKWNSADHKSQLSEGLEHRIGIMETSLSRFTMILDSVQSDVMQVNKGTKEIILEVECIRQKLIAQDNSLQLMTKGQEEIKAIIERSLKSLAEQMSHVSKKEKLQDVYLAVSALPQLIEASLQNVQNDLRNITKEMQEISCNLKSVNQKDLVPTSLSSKSISKQITTPKMRQPLANEAKVSIQATVAPEVESGGWKPVKKERVTFSDRTSEKVQKKKEPHTQKYIRGGRDCAIVIESDEEIDGGFSCLVQENAGVNLLGNLTKEALEETERILRKARRRKRKSIF*

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