SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00400 | AT | Annotation by Michelle Graham. TAIR10: glycerol-3-phosphate acyltransferase 8 | chr4:174312-176734 REVERSE LENGTH=500 | SoyBase | E_val: 0 | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010143 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cutin biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| GO:0090447 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerol-3-phosphate 2-O-acyltransferase activity | SoyBase | N/A | ISS |
| KOG2848 | KOG | 1-acyl-sn-glycerol-3-phosphate acyltransferase | JGI | ISS | |
| PTHR15486 | Panther | ANCIENT UBIQUITOUS PROTEIN | JGI | ISS | |
| PF01553 | PFAM | Acyltransferase | JGI | ISS | |
| UniRef100_G7LBQ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ER glycerol-phosphate acyltransferase n=1 Tax=Medicago truncatula RepID=G7LBQ7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KI92 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KI92_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma07g07580 not represented in the dataset |
Glyma07g07580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g01070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g069700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g07580.2 sequence type=transcript gene model=Glyma07g07580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAACCCCAAGGTCAAATCCGTAATTCTACAATACAGAAGCAACATTTAAAACCCAACGTTTCCCCACTCTCTCTTCTCGCGCTCTCTGCAACTGCAACTACAACAACATTCATTCATTCACAGCTGTCACGCCGTGAACGGAAAATGGCAACGGCGAGACGCAGTTTCCCGCCTATCACCGAATGCAACGGAACGACGCCGTGCGAGTCTGTGGCCGCCGACCTCGACGGTACGCTCCTCATCTCCCGTAGCTCGTTCCCGTACTTCATGCTCGTCGCCGTCGAAGCCGGCAGCCTCCTCCGCGGCCTCATCCTCCTCCTCTCCCTTCCGTTCGTCATCATCGCCTACCTCTTCATCTCCGAATCTCTCGGCATCCAGATCCTCATCTTCATCTCCTTCTCCGGCCTCAAGATCCGCGACATCGAACTCGTCTCACGCGCCGTCCTCCCTAGGTAACTCACTCACTCGATTTCTTTCTCTACTTCGTTTCTGTGTTCTGATCGCGCGTGAGTGCAGGTTTTATGCTGCGGATGTGAGGAAGGAGAGCTTCGAGGTGTTCGACCGGTGCAAGAGGAAGGTCGTGGTGACGGCGAATCCGACGCTGATGGTGGAGCCGTTCGTGAAGGACTTTCTCGGCGGAGACAAGGTTCTAGGCACGGAGATCGAGGTGAATCCGAAGACGAAGAAGGCCACCGGTTTCGTGAAGAAGCCTGGCGTGCTCGTCGGAAAGTGGAAGCGTCTCGCGGTTTTGAAAGAGTTCGGCGATGAATCGCCGGATGTTGGACTCGGAGACCGCAAAACAGACCATGACTTCATGTCTATTTGCAAGGAGGGTTACATGGTGCCTCCGAGCAAATCAGCAAAGCCAGTCCCACAGGAGCGTCTGAAGAGCAGACTGATCTTCCACGACGGCCGTTTCGTGCAGAGGCCAGACCCACTGAACGCTCTCATCACCTTCACGTGGCTCCCCTTCGGCTTCATCCTCTCCATCATAAGGGTCTACTTCAACCTTCCTCTCCCAGAACGCATTGTCCGCTACACCTACGAGATGCTCGGCATCAACCTCGTCATCCGCGGCCACCGCCCTCCTCCGCCTTCCCCCGGCACCCCCGGCAACCTCTACGTCTGCAACCACCGCACCGCTCTCGACCCCATCGTCATCGCCATTGCCCTCGGCCGCAAGGTCTCCTGCGTCACCTACAGCGTCAGCAAGCTCTCCCGCTTCCTTTCCCCCATCCCTGCCGTCGCCCTCAGCCGCGACCGCGCCGCCGACGCCGCCCGAATCAAGGAGCTCCTCCAGAGGGGCGACCTCGTCGTCTGCCCGGAGGGCACAACGTGCCGTGAACCCTTTTTACTTCGCTTCAGTGCACTCTTCGCTGAGCTAAGTGATAGGATCGTGCCTGTTGCTGTGAACTGCAAGCAGAACATGTTCTTTGGAACCACCGTTCGTGGCGTCAAGTTCTGGGACCCTTACTTCTTCTTCATGAACCCTAGGCCTGTGTACGAGGTTACCTTCCTTGATCCTTTGCCGGAGGAGATGTCGGTTAAGGCTGGGGGGAAGTCGTCCATTGAGGTGGCCAACCACGTGCAGAAGGTGCTGGGGGATGTGTTAGGGTTTGAGTGCACCGGGTTGACTAGGAAGGATAAGTATATGTTGTTGGGTGGGAATGATGGGAAGGTGGAATCTCTTTATGGTGCCAAGAAGTGAGATGGTGAATCAGGGGTTGCTTTGGTTTGATTGCATGTTTTGGGAGTTGATTGATATAAGAAGAAGAAAAAAGTAAAAACTAATTTCATTTTTTCAAGTATGGTTGATGGGTTAAGATAAATCAAAAGGTTAGCTAGTAAGCAAATAGCAATTGGTATTATTTTTTGTGCACCCTTTTTGAGATGGGGTTTTGTTATGGACTATAACTAAGTGCTGGTTTCACATTAGAAAAATTAATTCTTGATCTATAATTTATTTTTAATTTCAAGTTGAAAAAAAATTGAAATTGATTTTAAATTTAAAATTAATTATAAA
>Glyma07g07580.1 sequence type=CDS gene model=Glyma07g07580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACGGCGAGACGCAGTTTCCCGCCTATCACCGAATGCAACGGAACGACGCCGTGCGAGTCTGTGGCCGCCGACCTCGACGGTACGCTCCTCATCTCCCGTAGCTCGTTCCCGTACTTCATGCTCGTCGCCGTCGAAGCCGGCAGCCTCCTCCGCGGCCTCATCCTCCTCCTCTCCCTTCCGTTCGTCATCATCGCCTACCTCTTCATCTCCGAATCTCTCGGCATCCAGATCCTCATCTTCATCTCCTTCTCCGGCCTCAAGATCCGCGACATCGAACTCGTCTCACGCGCCGTCCTCCCTAGGTTTTATGCTGCGGATGTGAGGAAGGAGAGCTTCGAGGTGTTCGACCGGTGCAAGAGGAAGGTCGTGGTGACGGCGAATCCGACGCTGATGGTGGAGCCGTTCGTGAAGGACTTTCTCGGCGGAGACAAGGTTCTAGGCACGGAGATCGAGGTGAATCCGAAGACGAAGAAGGCCACCGGTTTCGTGAAGAAGCCTGGCGTGCTCGTCGGAAAGTGGAAGCGTCTCGCGGTTTTGAAAGAGTTCGGCGATGAATCGCCGGATGTTGGACTCGGAGACCGCAAAACAGACCATGACTTCATGTCTATTTGCAAGGAGGGTTACATGGTGCCTCCGAGCAAATCAGCAAAGCCAGTCCCACAGGAGCGTCTGAAGAGCAGACTGATCTTCCACGACGGCCGTTTCGTGCAGAGGCCAGACCCACTGAACGCTCTCATCACCTTCACGTGGCTCCCCTTCGGCTTCATCCTCTCCATCATAAGGGTCTACTTCAACCTTCCTCTCCCAGAACGCATTGTCCGCTACACCTACGAGATGCTCGGCATCAACCTCGTCATCCGCGGCCACCGCCCTCCTCCGCCTTCCCCCGGCACCCCCGGCAACCTCTACGTCTGCAACCACCGCACCGCTCTCGACCCCATCGTCATCGCCATTGCCCTCGGCCGCAAGGTCTCCTGCGTCACCTACAGCGTCAGCAAGCTCTCCCGCTTCCTTTCCCCCATCCCTGCCGTCGCCCTCAGCCGCGACCGCGCCGCCGACGCCGCCCGAATCAAGGAGCTCCTCCAGAGGGGCGACCTCGTCGTCTGCCCGGAGGGCACAACGTGCCGTGAACCCTTTTTACTTCGCTTCAGTGCACTCTTCGCTGAGCTAAGTGATAGGATCGTGCCTGTTGCTGTGAACTGCAAGCAGAACATGTTCTTTGGAACCACCGTTCGTGGCGTCAAGTTCTGGGACCCTTACTTCTTCTTCATGAACCCTAGGCCTGTGTACGAGGTTACCTTCCTTGATCCTTTGCCGGAGGAGATGTCGGTTAAGGCTGGGGGGAAGTCGTCCATTGAGGTGGCCAACCACGTGCAGAAGGTGCTGGGGGATGTGTTAGGGTTTGAGTGCACCGGGTTGACTAGGAAGGATAAGTATATGTTGTTGGGTGGGAATGATGGGAAGGTGGAATCTCTTTATGGTGCCAAGAAGTGA >Glyma07g07580.2 sequence type=CDS gene model=Glyma07g07580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGAGCCGTTCGTGAAGGACTTTCTCGGCGGAGACAAGGTTCTAGGCACGGAGATCGAGGTGAATCCGAAGACGAAGAAGGCCACCGGTTTCGTGAAGAAGCCTGGCGTGCTCGTCGGAAAGTGGAAGCGTCTCGCGGTTTTGAAAGAGTTCGGCGATGAATCGCCGGATGTTGGACTCGGAGACCGCAAAACAGACCATGACTTCATGTCTATTTGCAAGGAGGGTTACATGGTGCCTCCGAGCAAATCAGCAAAGCCAGTCCCACAGGAGCGTCTGAAGAGCAGACTGATCTTCCACGACGGCCGTTTCGTGCAGAGGCCAGACCCACTGAACGCTCTCATCACCTTCACGTGGCTCCCCTTCGGCTTCATCCTCTCCATCATAAGGGTCTACTTCAACCTTCCTCTCCCAGAACGCATTGTCCGCTACACCTACGAGATGCTCGGCATCAACCTCGTCATCCGCGGCCACCGCCCTCCTCCGCCTTCCCCCGGCACCCCCGGCAACCTCTACGTCTGCAACCACCGCACCGCTCTCGACCCCATCGTCATCGCCATTGCCCTCGGCCGCAAGGTCTCCTGCGTCACCTACAGCGTCAGCAAGCTCTCCCGCTTCCTTTCCCCCATCCCTGCCGTCGCCCTCAGCCGCGACCGCGCCGCCGACGCCGCCCGAATCAAGGAGCTCCTCCAGAGGGGCGACCTCGTCGTCTGCCCGGAGGGCACAACGTGCCGTGAACCCTTTTTACTTCGCTTCAGTGCACTCTTCGCTGAGCTAAGTGATAGGATCGTGCCTGTTGCTGTGAACTGCAAGCAGAACATGTTCTTTGGAACCACCGTTCGTGGCGTCAAGTTCTGGGACCCTTACTTCTTCTTCATGAACCCTAGGCCTGTGTACGAGGTTACCTTCCTTGATCCTTTGCCGGAGGAGATGTCGGTTAAGGCTGGGGGGAAGTCGTCCATTGAGGTGGCCAACCACGTGCAGAAGGTGCTGGGGGATGTGTTAGGGTTTGAGTGCACCGGGTTGACTAGGAAGGATAAGTATATGTTGTTGGGTGGGAATGATGGGAAGGTGGAATCTCTTTATGGTGCCAAGAAGTGA
>Glyma07g07580.1 sequence type=predicted peptide gene model=Glyma07g07580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATARRSFPPITECNGTTPCESVAADLDGTLLISRSSFPYFMLVAVEAGSLLRGLILLLSLPFVIIAYLFISESLGIQILIFISFSGLKIRDIELVSRAVLPRFYAADVRKESFEVFDRCKRKVVVTANPTLMVEPFVKDFLGGDKVLGTEIEVNPKTKKATGFVKKPGVLVGKWKRLAVLKEFGDESPDVGLGDRKTDHDFMSICKEGYMVPPSKSAKPVPQERLKSRLIFHDGRFVQRPDPLNALITFTWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGINLVIRGHRPPPPSPGTPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAVALSRDRAADAARIKELLQRGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAVNCKQNMFFGTTVRGVKFWDPYFFFMNPRPVYEVTFLDPLPEEMSVKAGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVESLYGAKK* >Glyma07g07580.2 sequence type=predicted peptide gene model=Glyma07g07580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEPFVKDFLGGDKVLGTEIEVNPKTKKATGFVKKPGVLVGKWKRLAVLKEFGDESPDVGLGDRKTDHDFMSICKEGYMVPPSKSAKPVPQERLKSRLIFHDGRFVQRPDPLNALITFTWLPFGFILSIIRVYFNLPLPERIVRYTYEMLGINLVIRGHRPPPPSPGTPGNLYVCNHRTALDPIVIAIALGRKVSCVTYSVSKLSRFLSPIPAVALSRDRAADAARIKELLQRGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAVNCKQNMFFGTTVRGVKFWDPYFFFMNPRPVYEVTFLDPLPEEMSVKAGGKSSIEVANHVQKVLGDVLGFECTGLTRKDKYMLLGGNDGKVESLYGAKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
