Glyma07g07540 - SoyBase

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Report for Sequence Feature Glyma07g07540

Feature Type:	gene_model
Chromosome:	Gm07
Start:	6224182
stop:	6227132
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g07540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G63800	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 5 \| chr1:23667888-23669003 REVERSE LENGTH=185	SoyBase	E_val: 2.00E-110	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0416	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF19	Panther		JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
UniRef100_Q9SPB9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ubiquitin carrier protein 4 n=2 Tax=Glycine max RepID=Q9SPB9_SOYBN	SoyBase	E_val: 3.00E-133	ISS
UniRef100_Q9SPB9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein 4 n=2 Tax=Glycine max RepID=Q9SPB9_SOYBN	SoyBase	E_val: 3.00E-133	ISS

Expression Patterns of Glyma07g07540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g07540

Paralog	Evidence	Comments
Glyma16g03940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g07540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g069300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g07540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g07540

Limit To All Plant Sequences

>Glyma07g07540.2   sequence type=transcript   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTATCTGATTTTTATTATCTGAGTTCTGGTTTTGCTTATTACTGTCTGAACCAATTTTACCTCTTCAAGTTGCACAAGCAAAGTTCTCCCTCAATCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTTAATTCCTGAAAAGCAAGTAACTAAGGAAAAGAAAACACAACACACACACAAAGGAAAAAACAGAAAAACCATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGTTAATCCACCACTTCTTCTGTTTTCCTTTTCCCTTCTATTTCCATTAAAGTTATAATTTTTTTTTTCTAATTGGGTGTCTAAGTTTGACTCTTGATTCTGATTTTGATGTTAGTTTTTTTTTTTAATTAATAGGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGATATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAGCCTTGCATGCATGTCCTGTTCTTCTCATTCTATCTTTTACTTGTACATGATGTTCTAGTCATGTTAATTCACCTCATTAAATGTAATGTACTTGGTTGTGGATAGGGGGAAATTCTCCTTCCTGTTATTTAGTTTACTGTCACTGTAAATAATGTACCATTGATTACCTGATGCATTCTTATTTATTCTTAATCTCCTCCAAGTAAATGGATTAATTGCTTGTTTGGCTACATATCAAGATTTCTTCTA

>Glyma07g07540.4   sequence type=transcript   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTATCTGATTTTTATTATCTGAGTTCTGGTTTTGCTTATTACTGTCTGAACCAATTTTACCTCTTCAAGTTGCACAAGCAAAGTTCTCCCTCAATCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTTAATTCCTGAAAAGCAAGTAACTAAGGAAAAGAAAACACAACACACACACAAAGGAAAAAACAGAAAAACCATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGTTAATCCACCACTTCTTCTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGATATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAGCCTTGCATGCATGTCCTGTTCTTCTCATTCTATCTTTTACTTGTACATGATGTTCTAGTCATGTTAATTCACCTCATTAAATGTAATGTACTTGGTTGTGGATAGGGGGAAATTCTCCTTCCTGTTATTTAGTTTACTGTCACTGTAAATAATGTACCATTGATTACCTGATGCATTCTTATTTATTCTTAATCTCCTCCAAGTAAATGGATTAATTGCTTGTTTGGCTACATATCAAGATTTCTTCTA

Coding sequences of Glyma07g07540

Limit To All Plant Sequences

>Glyma07g07540.1   sequence type=CDS   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGATATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG

>Glyma07g07540.2   sequence type=CDS   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGATATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG

>Glyma07g07540.4   sequence type=CDS   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTGAGGGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTATCAATAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTTGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTCAATGTGTTTGAGGTGTTTCTACCACAACTTCTTCTGTATCCCAATCCATCAGACCCCTTAAATGGTGAAGCTGCAGCTTTAATGATGCGGGATCGAGCCACTTATGAACAAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAACCTGAAGATATAGGAGCTGCCACAGAAGAGAACTCCAGTGATGAGGAGCTAACTGAAGATGAATATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGACCCCTAG

Predicted protein sequences of Glyma07g07540

Limit To All Plant Sequences

>Glyma07g07540.1   sequence type=predicted peptide   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEENSSDEELTEDEYDSSDEQVAGKADP*

>Glyma07g07540.2   sequence type=predicted peptide   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEENSSDEELTEDEYDSSDEQVAGKADP*

>Glyma07g07540.4   sequence type=predicted peptide   gene model=Glyma07g07540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPDAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRATYEQRVKEYCEKYAKPEDIGAATEENSSDEELTEDEYDSSDEQVAGKADP*

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