Glyma07g07500 - SoyBase

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Report for Sequence Feature Glyma07g07500

Feature Type:	gene_model
Chromosome:	Gm07
Start:	6184378
stop:	6188901
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g07500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00335	AT	Annotation by Michelle Graham. TAIR10: RING-H2 finger B1A \| chr4:146866-147962 FORWARD LENGTH=190	SoyBase	E_val: 9.00E-79	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22937	Panther	RING FINGER CONTAINING PROTEIN	JGI		ISS
PTHR22937:SF23	Panther		JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7LBQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7LBQ0_MEDTR	SoyBase	E_val: 1.00E-109	ISS
UniRef100_I1KI83	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI83_SOYBN	SoyBase	E_val: 5.00E-136	ISS

Expression Patterns of Glyma07g07500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g07500 not represented in the dataset	Glyma07g07500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g07500

Paralog	Evidence	Comments
Glyma16g03890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g07500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g068900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g07500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g07500

Limit To All Plant Sequences

>Glyma07g07500.4   sequence type=transcript   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTCCAAAGCCAACAAACGACAAAGTTCCTTATGACACAGAATCGAGTGGAGCGCGTAACACTATGCACAACCCCACCAACACAACACAGTAACATCAAAAGTACTGTGTAACAAACAACCAACATTAACCTATGTACACATAATCGAACTTCTCAATTTCACAACCCCTCTCTATCCCTTTTCGTGGAACCCATTTCCCATCTCCCCCTTCCAAATAAGGTACTTTTTTTATATTCCCTAAACAAAAAAAATAAAGGACTGTTTCCCTTTTCCACCGCAAAGTTTAGGGTTTATGCCATCAATTTTGATTCAAATAGGCTTTGGGTACTCATCTGGGTCATGGTGTTTGCTCTGTTTTGTTGTGTCTGAATGAATGCATAAAGTTTGGTGGCATCTGATCCTTTTTCGATCCCAAATAACAGAAGAGAATGAGAGTATCACTGGTAGGTTTGATTATTTAACAGAAAAACGGTTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTAACGTCTAATGATGGTACAGCTACGTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCATCCCCCTCCTGCACCTCTACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCAAAGATCCTGAAGAATCTGACTGTAAAATTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGGATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACATTGAACTAGTTCTGTTGTTTAAAAAAAAAAAAAAGAGCTTGCTAAATGCGTGAAAGGTAGATGAAAAAAAACTCATTGTTTGATAGCTGGTTAGAAGATAGTACAAATTCATTTTCAATTCCTAGAGCATTTAAAAGGTCGTTGTTTTAATGGACCCATTCGTTGGGCATACAATCTGGGAGAAGAAGAATGAGAAGGTTTTGACAGAATGCTACACCACATTGCGTGTCTCTTTGAGTGCAATTTCTCATGTTGGAACTTACCTATCATCAGTGAAAGAATGCAGCTTTTCTCAATAAGAAGAAATTCATGCTCACGGAATGGCTTCCACTCCCCCCCCATGTTGCTTTGCTGCTCTCTCTCTCCATTTTCTTGTACAAATTTCTCAATATCTATTTGTTTTTCTATGTTATTTTCTTTGTGTGAGAAAAAAAAAATGAATACTGATCTTGTAAATCAAGTCTGCTTTACATTTTGCCACATTTTCAATGTATATTGTGGTGGATGTTGTTGGGGATCCCTTCTTTTGTTGTATACACTGAACCCCTTTATTTTAAATTGAAATTTCTTCTGCTTGGTGGCAAAAAGGGGTAATCGTGAGCATTGTTAATCTATGTAGATTCTGCTGGTTGACAGTGAACTCAATATTTGTTGTTTTCCTATGGTAGAAGTTGGATGCTGTAAAGAGTAAGCAAGAGGTATTACACATTCTCATTGTTCCAGTTGTCTTTCTCTGCACATGTGTATGGA

>Glyma07g07500.5   sequence type=transcript   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTCACAACCCCTCTCTATCCCTTTTCGTGGAACCCATTTCCCATCTCCCCCTTCCAAATAAGCAGAATGAATGCATAAAGTTTGGTGGCATCTGATCCTTTTTCGATCCCAAATAACAGAAGAGAATGAGAGTATCACTGGTAGGTTTGATTATTTAACAGAAAAACGGTTGGAAAATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTAACGTCTAATGATGGTACAGCTACGTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCATCCCCCTCCTGCACCTCTACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCAAAGATCCTGAAGAATCTGACTGTAAAATTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGGATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACATTGAACTAGTTCTGTTGTTTAAAAAAAAAAAAAAGAGCTTGCTAAATGCGTGAAAGGTAGATGAAAAAAAACTCATTGTTTGATAGCTGGTTAGAAGATAGTACAAATTCATTTTCAATTCCTAGAGCATTTAAAAGGTCGTTGTTTTAATGGACCCATTCGTTGGGCATACAATCTGGGAGAAGAAGAATGAGAAGGTTTTGACAGAATGCTACACCACATTGCGTGTCTCTTTGAGTGCAATTTCTCATGTTGGAACTTACCTATCATCAGTGAAAGAATGCAGCTTTTCTCAATAAGAAGAAATTCATGCTCACGGAATGGCTTCCACTCCCCCCCCATGTTGCTTTGCTGCTCTCTCTCTCCATTTTCTTGTACAAATTTCTCAATATCTATTTGTTTTTCTATGTTATTTTCTTTGTGTGAGAAAAAAAAAATGAATACTGATCTTGTAAATCAAGTCTGCTTTACATTTTGCCACATTTTCAATGTATATTGTGGTGGATGTTGTTGGGGATCCCTTCTTTTGTTGTATACACTGAACCCCTTTATTTTAAATTGAAATTTCTTCTGCTTGGTGGCAA

Coding sequences of Glyma07g07500

Limit To All Plant Sequences

>Glyma07g07500.3   sequence type=CDS   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTAACGTCTAATGATGGTACAGCTACGTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCATCCCCCTCCTGCACCTCTACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCAAAGATCCTGAAGAATCTGACTGTAAAATTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGGATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACATTGAACTAG

>Glyma07g07500.4   sequence type=CDS   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTAACGTCTAATGATGGTACAGCTACGTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCATCCCCCTCCTGCACCTCTACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCAAAGATCCTGAAGAATCTGACTGTAAAATTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGGATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACATTGAACTAG

>Glyma07g07500.5   sequence type=CDS   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGAACGCCAGTGTATTACTATTGCCCACCAACTTTAGAAGAGCATGAGTCTTTAACGTCTAATGATGGTACAGCTACGTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAACTTCCACACCTGATACATACCATCCCCCTCCTGCACCTCTACCTTATGATATGGTCCTGGGAGGTCCAGCATCAACAGATTCTGAATCAGGCAGAGAAACAGTTAGTGGTAGTAGCTTTGAAACATTAATTACATGCAAAGATCCTGAAGAATCTGACTGTAAAATTAAAGCTAATTCAGCACCTATATCTCCAAGCAAGGCTGGATTGTCAAAATCTAAAGAATTTCATGCATTAGTAACAGAAGAAGAGGACGGCTGTCCAATTTGTCTTGAAGAGTATGATGTTGAGAATCCTAAAACTCTGACAAAATGTGAACACCACTTTCATCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGCGATCAGGAGATGATATTTGACCAGACATTGAACTAG

Predicted protein sequences of Glyma07g07500

Limit To All Plant Sequences

>Glyma07g07500.3   sequence type=predicted peptide   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTATSLTTGLLVGLNLETSTPDTYHPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCKDPEESDCKIKANSAPISPSKAGLSKSKEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN*

>Glyma07g07500.4   sequence type=predicted peptide   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTATSLTTGLLVGLNLETSTPDTYHPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCKDPEESDCKIKANSAPISPSKAGLSKSKEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN*

>Glyma07g07500.5   sequence type=predicted peptide   gene model=Glyma07g07500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTATSLTTGLLVGLNLETSTPDTYHPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCKDPEESDCKIKANSAPISPSKAGLSKSKEFHALVTEEEDGCPICLEEYDVENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN*

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